Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01384 ATGGAGGGAACTTCATCGGCTTCTATGACTTTTCCCTCCACTCCTGAGGATCATTTCTTAGTTGACGATTTCTATTTTTCGGCCCTTTACGATGCTGAAGAAGTATTTCCAATTTCGGATGAGAAATATGCTGAAGAGCTACAACTACAAGAAGCCCTTTATTCCTCTACAATGTCAAGTACTAGAATTGAAACCGAAGTTATCCAAGTGGATACAGATGATGAGGCTGAAACCTCTGTGAGAATCCTGAAGTGGAAACAGAAAGAGGGCGGTGAATCTTCTCAAGTCTACTGTGGTATTTGCATGGAACCCAAATCTAGGGAAGAAATGTTCAGGAACCAAAATTGCACTCACTCATTTTGTGATGATTGTATTGGCAGATATGTGGGTGCAAAGATTCAGGAGAATATATCAGTGGTGAAGTGTCCTGACCCGAAATGCACGGGGGTTGTAGAGCCTCAGTTCTGTCGTTCAATCATCCCTAAGGAAGTCTTAGATCGATGGGAGAATGCTCTTTGTGAGAATTGGCTGCTTGGATCACAAAACTTTTGTTGCCCCTTTAAAGATTGCTCAGCCATGCTCATATCTGATGCTGAGGAAACAGTCACTACTTCGGAATGTCCACATTGTAATAGGCTGTTCTGTGCACAGTGCAAGGTTTCATGGCATGCAGGAATGGATTGCAACGAGTTTCGGAACTTGAAGCCGGATGAGAGAGGAAGGGATGATCTAATGGTGTTGGAACTTGCTAAGGACAAAAATGCGGCAATGAATTTTGTTACGTCTGTGGATCCCCTTGGAGACAACACCAGGTATGTTGACCTTAACTATACACTTTCATCCAATCATTCTTACTACAGAATTGGTGCAGACATAAGTGAAATTTCAAGAGCAAAGCAGCAATGTCATTGA 912 0.4254 MEGTSSASMTFPSTPEDHFLVDDFYFSALYDAEEVFPISDEKYAEELQLQEALYSSTMSSTRIETEVIQVDTDDEAETSVRILKWKQKEGGESSQVYCGICMEPKSREEMFRNQNCTHSFCDDCIGRYVGAKIQENISVVKCPDPKCTGVVEPQFCRSIIPKEVLDRWENALCENWLLGSQNFCCPFKDCSAMLISDAEETVTTSECPHCNRLFCAQCKVSWHAGMDCNEFRNLKPDERGRDDLMVLELAKDKNAAMNFVTSVDPLGDNTRYVDLNYTLSSNHSYYRIGADISEISRAKQQCH 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01384 303 SUPERFAMILY RING/U-box 92 177 - -
Pste6g01384 303 SUPERFAMILY RING/U-box 177 232 - -
Pste6g01384 303 ProSitePatterns Zinc finger RING-type signature. 116 125 IPR017907 -
Pste6g01384 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 176 IPR013083 -
Pste6g01384 303 SMART ibrneu5 166 228 IPR002867 GO:0008270
Pste6g01384 303 ProSiteProfiles TRIAD supradomain profile. 94 303 IPR044066 -
Pste6g01384 303 Pfam IBR domain, a half RING-finger domain 167 228 IPR002867 GO:0008270
Pste6g01384 303 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 66 252 IPR031127 GO:0004842|GO:0016567
Pste6g01384 303 FunFam RBR-type E3 ubiquitin transferase 93 179 - -
Pste6g01384 303 CDD BRcat_RBR_unk 179 231 - -
Pste6g01384 303 ProSiteProfiles Zinc finger RING-type profile. 98 146 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01384 90 229 C3H Transcription Factor Family AT2G31770 26.174 5.38e-11 61.2