Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01374 AGCTCGCACCTCACTCCAAACTCAATTATATACAAAACCCTGAAGAAAGATACAGCCATTGTTACTTTTCATTGAGCCAAAGCTTTGGCTTTTCTGCGATAAATTTCCATTGGGTGCAAGAAATTCTCAATCTTTCGTTGAAAGAGCAACGATCTGAGGAACAATCATGTGTGGTGGTGCGATTATCTCCGACTTCATTCCGGCGGGTCCCGCAGGCCGATCCAGGCGCGTGACTGCTGACATCCTGTGGCCGATTTTGAGGAAGCCCAGTGTGGGGAAGCGATTTTCGAAGCCGCTGTTGGACGATGATTTCGAGGCTGGGTTCAGAGAATTCAAGGATGACTCGGAAATCGAGGAGGATGACGATGAGGAAGAGGACTTGATGGTGGTTGGTGTGAAGCAACCCTTTGCCTTTTCTGCTTCCAACAAGGCTTCTAAGCCTCTATCTCGTGGATCAACAGCTGTAAGATCTGTGGAATTGAAGGGCCAAGCTGAGAAGTGTGCCAAGAGAAAGAGGAAGAATCAGTATAGGGGAATCCGCCAGCGTCCATGGGGAAAGTGGGCTGCTGAGATCCGTGACCCTAGAAAGGGGGTTCGGGTCTGGCTTGGAACTTTCAGCACTGCTGAAGAAGCCGCAAGGGCTTATGATGCTGAAGCAAGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGATGAACCTTCAGGTGCTTCCTCAAAGCGTTTCAAGGCAAATCCAGAGGCTCAGCCACTGAAGGAAAATCTCAACTGGGTAAAGCCAAATATGAACCAGATGTTCAATTTTGGCAACAATCTGGAGGACTTGTACAGCGTTATAGATCAGGTGGAAGAGAAACCACTGGTTAACCAGTTTGATAACCCTGCCCCCTTTGCTGGAAATGGAGTTCAAGTCTCATGTGTTTCTCCATCTGCTGATGTTACTGCCTATTTAAGTTCTGAGCATTCAAGCAATTCTTTTAATTATTCTGAGCTTGGATGGGGTGAACAAGTCCCAAAGACTCCTGAGATCTCATCCATGCTTTCTGCTGCTCCTTTGGAGGTTGAACCTCAGTTTTTGCAGGGAGGTGATCAAACTCAGAAGAAAAATTCTGAGGATGTGATGCCTATGCAAGATGATTCTGCAAAGACACTCTCTGAGGAGCTTACTGATATTGAATCCCAGCTTAAGTTCTTTGAGACCCCTTTTCTTGATGGTTGGACTGATGCTACAATGGCGTCACTGCTCGGTGGAGATGCTACTCAGGAAGCTGGAAACCCGATGAACCTTTGGAGCTTTGATGACCTGCCTTCCATGGCAGGAGTTTTCTGAGCAACCTTGTCTCCCCTGTATGTAAATAAAGCTACAAGTTCGTGATTTTCATGCTGCCTCTAATTTCTTTAATTTTATTTTTGTTCTCTCAAAGTAAGCATCCCTGCATGTTTATGAAAGTTATTTATTATAATTTTTATGTGCATTGGTTTCAGCAGTTGTGTTCGTGGTGTTGCTGATGGAGTCTGAGAGTAACCTGCTTCTGCATATGTGGAGTTTATTTCTCTTGTAGCTAATGCACAGGACTACATAGGTTTTTAGTATCCTTGGTGAACACATACAAAGACTTCATGTTATGGGGATTTTTCTGTTTAATGTACATAAGGATTATGTATGTTATATATGGTCTGGATACAGTCTTGACTGCGGATATAATTATTAACTTCTTGGTTGTTTTCATTATGGCAATTTCATTATGACTCAGATTATCCATTTTTCCTTGCTTTGTTGAGTGGATGATTTAAATTGCTGGAATTGTTTCTCTCTCTTGGTTTG 1828 0.4382 MCGGAIISDFIPAGPAGRSRRVTADILWPILRKPSVGKRFSKPLLDDDFEAGFREFKDDSEIEEDDDEEEDLMVVGVKQPFAFSASNKASKPLSRGSTAVRSVELKGQAEKCAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPDEPSGASSKRFKANPEAQPLKENLNWVKPNMNQMFNFGNNLEDLYSVIDQVEEKPLVNQFDNPAPFAGNGVQVSCVSPSADVTAYLSSEHSSNSFNYSELGWGEQVPKTPEISSMLSAAPLEVEPQFLQGGDQTQKKNSEDVMPMQDDSAKTLSEELTDIESQLKFFETPFLDGWTDATMASLLGGDATQEAGNPMNLWSFDDLPSMAGVF 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01374 388 SMART rav1_2 120 183 IPR001471 GO:0003700|GO:0006355
Pste6g01374 388 CDD AP2 120 178 IPR001471 GO:0003700|GO:0006355
Pste6g01374 388 FunFam Ethylene-responsive transcription factor 2 119 178 - -
Pste6g01374 388 SUPERFAMILY DNA-binding domain 120 178 IPR016177 GO:0003677
Pste6g01374 388 ProSiteProfiles AP2/ERF domain profile. 120 177 IPR001471 GO:0003700|GO:0006355
Pste6g01374 388 PANTHER DNA-BINDING DOMAIN 91 301 IPR044808 GO:0003700|GO:0009873
Pste6g01374 388 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Pste6g01374 388 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
Pste6g01374 388 Pfam AP2 domain 120 169 IPR001471 GO:0003700|GO:0006355
Pste6g01374 388 Gene3D AP2/ERF domain 119 178 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01374 Pste-Chr6 5945057 5948497 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01374 1 384 AP2-EREBP Transcription Factor Family AT3G14230 44.203 4.98e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste6g01374 AP2 4.7e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01374 6 5945057 5948497 Pste6g01374 6 5945057 5948497 ECH