Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01357 AACAAAACCCATTAGGGTTTTCCGCGGTATATTAGAAACTCCCCGCAGGTTTAGCTCCTAAAGCCTCTTGCCGCATTCACTGAAACACTAGGGTTTGCGACCTCGTTGTTTCAGAGTCTGTGAAGTACGCAGCCATGGCCGCCGCCACCAACGCCGCCGCTGCCCCGCCGCGTCAGCTTTCGCAAAAGGAAGCTGACATTCAAATGATGTTGGCCGCCGACGTCCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACATCTTCAAGCGCCGCAACGACGGTATTTACATAATTAACCTTGGGAAGACGTGGGAGAAGCTTCAACTTGCTGCTAGGGTTATTGTTGCTATAGAGAACCCTCAGGATATCATTGTTCAATCTGCAAGGCCTTATGGTCAGAGAGCTGTTCTTAAGTTTGCTCAGTACACTGGTGCTCATGCCATTGCTGGAAGGCACACTCCCGGTACCTTCACCAATCAGCTTCAAACCTCTTTCAGTGAGCCTCGTCTCCTCATCCTCACCGATCCAAGGACTGATCACCAGCCTATTAAGGAAGCTGCTCTTGGAAACATTCCAACCATTGCTTTCTGTGACACCGATTCGCCTATGAGGTATGTCGATATTGGAATTCCTGCCAACAACAAGGGCAAGCACAGCATTGGTTGTCTCTTTTGGCTTCTTGCAAGAATGGTGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGACGTCATGGTAAAATGTTTCTTCTGCCTTTCTCAAGTAGGATCTAGCACCGTATTTGGTACCTTATTACTGTTTTATGAAGATCGAAAATTTCAGATGAATAATGTGCCTGATTTACTTATGCCTGATATACGGATTGTTGTTTTTGGTCGGAAGAAATGTATAGTGGATTTGTTCTTCTATAGAGAACCAGAGGAGGCCAAGCAACAAGAGGAGGAGGAGGCCCCAGCAGGTGATTATGCCATCACAGACTTCAATGCAGGTGCTATTGCTGCCGACGGCCAGTGGCCTGTTGCAATAGATCAACCGTGGTCTGAAGCAGTTCCACAACCAATTCCAGCAGTACCTGGTGTCAACTGGGTGGCACCTGCAGAAGCAGCAGCACCAGTTGATTGGGATGAGGCCGTTCCACCACCGCAAGCAACCCCTGTACCTTCTTCTGGAACTGAATCTGTCCAAGCGTCTGGTTGGGATTAAATTATTGCTTTTTTGACGGAATGATTTTGCCCTGCAATTTAGTTTTCTTGTCTTCGAAGTAAAATATGGAACATGTTTTTTTGTAGCAAAGGAACTTGTTTTTTTGTAGTTTGTTTGAGTGGCAGAAATATTATTATTAACATGATATATTCGGTAAGATTATATTTTGTTTTGATGCAGTCATGATTCATGAATGTTTTACTAATGCTATTATCTCTCCTTTGCTTTACATTGAATTATAATAGGTTAAT 1468 0.453 MAAATNAAAAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVKCFFCLSQVGSSTVFGTLLLFYEDRKFQMNNVPDLLMPDIRIVVFGRKKCIVDLFFYREPEEAKQQEEEEAPAGDYAITDFNAGAIAADGQWPVAIDQPWSEAVPQPIPAVPGVNWVAPAEAAAPVDWDEAVPPPQATPVPSSGTESVQASGWD 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01357 360 Hamap 40S ribosomal protein SA [rps-0]. 9 309 IPR027498 GO:0003735|GO:0006412|GO:0015935
Pste6g01357 360 FunFam 40S ribosomal protein SA 21 216 - -
Pste6g01357 360 NCBIfam 30S ribosomal protein S2 17 210 IPR005707 GO:0003735|GO:0006412|GO:0015935
Pste6g01357 360 PANTHER 40S RIBOSOMAL PROTEIN SA 254 355 IPR005707 GO:0003735|GO:0006412|GO:0015935
Pste6g01357 360 Pfam Ribosomal protein S2 25 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pste6g01357 360 Pfam Ribosomal protein S2 124 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pste6g01357 360 SUPERFAMILY Ribosomal protein S2 17 206 IPR023591 -
Pste6g01357 360 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Pste6g01357 360 Gene3D - 21 217 - -
Pste6g01357 360 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pste6g01357 360 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pste6g01357 360 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pste6g01357 360 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pste6g01357 360 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pste6g01357 360 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pste6g01357 360 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pste6g01357 360 MobiDBLite consensus disorder prediction 331 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01357 Pste-Chr6 5854140 5856287 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01357 4 330 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 64.157 4.90e-141 399
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01357 6 5854140 5856287 Pste6g01357 6 5854140 5856287 ECH