Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01348 atgtcatcctcttcaaccacattatcactggaccacctccctccttccgaacagctttgttatgttcactgcaatatttgtgacaccgtccttgctgtaagtgttccctgtacaagcttgttcaagactgtcactgtccgatgtggccattgcactaacctcctgccggtgaacatgcgtgggttgcttgtgtcgtctcccactcaatttcatttgggtcactctttcttctccccatctcataaccttctggaggagataccaaacccctccccaaattttcttatgaaccaaacaaatttaagtgtatcaaatgagttctctatgcctgctaggactgcagctgatgagcttccacggcctccgatcataaatagacctcctgagaagagacagagagtcccctccgcgtacaaccgctttattaaggacgagatccaacgcatcaagtctgtcaatcccgatataactcacagggaagccttcagtgcagctgcaaagaattgggcccacttcccacacatccactttggtctcatgccggaacagactgtgaagaagacaaatgtgtgccagcaggaaggagaggaggttctcatgaaagatgggttttacgcttcagctaatgttggtgtctcaccctactaa 648 0.0 MSSSSTTLSLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLVSSPTQFHLGHSFFSPSHNLLEEIPNPSPNFLMNQTNLSVSNEFSMPARTAADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPEQTVKKTNVCQQEGEEVLMKDGFYASANVGVSPY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01348 215 SUPERFAMILY HMG-box 123 172 IPR036910 -
Pste6g01348 215 CDD HMG-box_SF 133 169 - -
Pste6g01348 215 Gene3D High mobility group box domain 124 183 IPR036910 -
Pste6g01348 215 FunFam Axial regulator YABBY 124 195 - -
Pste6g01348 215 PANTHER PROTEIN YABBY 6-RELATED 1 189 IPR006780 GO:0007275
Pste6g01348 215 Pfam YABBY protein 15 179 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01348 Pste-Chr6 5809779 5812681 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01348 26 213 C2C2-YABBY Transcription Factor Family AT4G00180 58.373 9.90e-61 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pste6g01348 YABBY 1.2e-70 CL0114