Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01339 atgaacacattttcacatgtacctccaggctttaggtttcatccaaccgatgaagagctcgtcggttactaccttaggaaaaaggtagcatctaaaaggattgatttagatgtcatcaaagatgtcgatctctataaaattgaaccatgggatctccaagaattatgcaaaataggaacggatgaacaaagtgactggtattttttcagtcataaagataagaaatacccaactggaactcgcaccaatagagctacaaaagcaggattctggaaagcaacgggaagagacaaggcaatatactctaagcattgtctgattggcatgagaaagactctggtgttttacaaaggaagggccccaaatggacagaagtctgattggatcatgcatgaatacaggctagaaactaatgaaaatggaactcctccggtatttagcacctattacccttcctctgctttaaataacacttcaatctcataa 486 0.0 MNTFSHVPPGFRFHPTDEELVGYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGTDEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTPPVFSTYYPSSALNNTSIS 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01339 161 ProSiteProfiles NAC domain profile. 7 152 IPR003441 GO:0003677|GO:0006355
Pste6g01339 161 Gene3D NAC domain 16 153 IPR036093 GO:0003677|GO:0006355
Pste6g01339 161 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Pste6g01339 161 FunFam Nac domain-containing protein 86 16 153 - -
Pste6g01339 161 SUPERFAMILY NAC domain 5 142 IPR036093 GO:0003677|GO:0006355
Pste6g01339 161 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01339 Pste-Chr6 5761079 5764729 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01339 1 143 NAC Transcription Factor Family AT1G12260 91.608 1.34e-99 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste6g01339 NAM 2.1e-38 No_clan