Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01335 AATAATATGATTCCCAAAAGCGCAAATAATAAATGGGAGGGTAAAATGGGTATATCGCCGGAGACCACGGAAGCAGTGACACCAGACAATAACAGAGAAGGTCCACCAACTGAGCCGGTGACGGAGTTTCGCTACTGTCCAATCACCTTCTGCCACGTCACCCACCCTTCCTCTGCCCTCTCCCCACGTATCGGCGGCGAGGAGGATATGGACGATGACGACGAGATCCAGTCGCATCCGTCTCCGGCAAGCGGATCCCCGGCATCTTCGCCGCAGGCGAACGGTCGGATAACGGTGACGGTCGCGGCACCGGCGCCTCAGGCGCCGCCACCGCCGAACAGTGTCGCATTAGCGCTTCCAATTCAGCAGCCGGTGAAGGGGAACGGCGGAGGAGGAGGCGGCGGCGGAGGGAGGGAGGATTGCTGGAGCGAAGGCGCGACGGCGGTGCTGATCGATGCGTGGGGAGAGAGGTATCTGGAACTTAGCCGAGGAAATCTGAAGCAGAAGCACTGGAAGGAGGTGGCGGAGATCGTGAGCGGAAGAGAGGATTACACCAAGGCTCCGAAGACGGATATTCAGTGCAAAAACCGGATCGATACCGTTAAGAAGAAGTACAAATCGGAGAAGGCGAAGATCGCCGCTGGCGCCACAAGCAAGTGGCCGTTCTACGACAGATTGGACCAATTAATAGGTCCAAGCGCCAAGATCCCCGGCGCCGGCGGTGCCTCCGGCACCAGTGCTGCCGGAAATAGTAATTCACAACCACAGAAAGTTCCGTTAGGGATTCCGGTCGGCGTTCGCGGCAGCGCGAATCAGTATCACCATCCTCAAAAACCGCAGCAGCAGCAGCAGCAAGTAACGCCGGTTCCGTTGAAGAACCAGAAGATTCAGTTCCGTCGGCGCGGTCCTGAGGCGGAGTCCGCCTCGGAGGAGCGTGACGCGTCGTCGCCAGCGTCGAGCGACAGTTTTCCGCCGGAGGGTTTTGAGCGGAAGAGGGCGAGAGTGATGAGTTCGAACGCGGAGAAAGGAAGCGGGGAAAGACGGAAGACGAAGGGTTGGGGAAGTGCGGTGAGGGAATTGACGCAGGCGATTCTGAAATTCGGCGAGGCTTATGAGCAAGCGGAGAGTTCGAAGCTGCAGCAGGTGGTGGAGATGGAGAAGCAGAGGATGAAGTTCGCGAAGGATTTGGAGTTGCAGAGAATGAAGTTTTTCATGAACACTCAGTTGGAGATTTCGCAGCTCAAGCTCGGGAGGAAAGGTGCTAATAACCCTAGCAATAATCACCATGACACCACCAACAATAACAATACCAACAACAATCATAACAATAATAGTGACATTAACTTAAGAGGGATAGATGTGCTGCACCCTACAACAGAGCAAAAAACATTGCAGGAGTATTTGGATATGCAACCTCATCCATACCAGTTTAGTACCTTTCAATTTCCTGCAATGTTTGAAGATGAATACCTGCCTCACCTGCTTCTATTCTTTTTTGGAAATGGTAGCAAAGAATTAGAGATATGTCTTCATGGATCACCATATGAAACTGCCGCTTTTAGAACACAATCAAACTTGTCTAATCAAATCACTGCAGAGCTCATATCTTTTACACAA 1617 0.5294 NNMIPKSANNKWEGKMGISPETTEAVTPDNNREGPPTEPVTEFRYCPITFCHVTHPSSALSPRIGGEEDMDDDDEIQSHPSPASGSPASSPQANGRITVTVAAPAPQAPPPPNSVALALPIQQPVKGNGGGGGGGGGREDCWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVSGREDYTKAPKTDIQCKNRIDTVKKKYKSEKAKIAAGATSKWPFYDRLDQLIGPSAKIPGAGGASGTSAAGNSNSQPQKVPLGIPVGVRGSANQYHHPQKPQQQQQQVTPVPLKNQKIQFRRRGPEAESASEERDASSPASSDSFPPEGFERKRARVMSSNAEKGSGERRKTKGWGSAVRELTQAILKFGEAYEQAESSKLQQVVEMEKQRMKFAKDLELQRMKFFMNTQLEISQLKLGRKGANNPSNNHHDTTNNNNTNNNHNNNSDINLRGIDVLHPTTEQKTLQEYLDMQPHPYQFSTFQFPAMFEDEYLPHLLLFFFGNGSKELEICLHGSPYETAAFRTQSNLSNQITAELISFTQ 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01335 539 Pfam Myb/SANT-like DNA-binding domain 139 229 IPR044822 -
Pste6g01335 539 MobiDBLite consensus disorder prediction 231 354 - -
Pste6g01335 539 FunFam trihelix transcription factor ASIL2 142 207 - -
Pste6g01335 539 MobiDBLite consensus disorder prediction 1 41 - -
Pste6g01335 539 MobiDBLite consensus disorder prediction 273 292 - -
Pste6g01335 539 MobiDBLite consensus disorder prediction 325 354 - -
Pste6g01335 539 MobiDBLite consensus disorder prediction 297 311 - -
Pste6g01335 539 MobiDBLite consensus disorder prediction 79 95 - -
Pste6g01335 539 Gene3D - 142 207 - -
Pste6g01335 539 MobiDBLite consensus disorder prediction 418 447 - -
Pste6g01335 539 MobiDBLite consensus disorder prediction 244 258 - -
Pste6g01335 539 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 96 417 IPR044823 -
Pste6g01335 539 MobiDBLite consensus disorder prediction 55 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01335 Pste-Chr6 5742410 5744564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01335 70 429 Trihelix Transcription Factor Family AT3G14180 46.667 4.73e-99 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pste6g01335 Myb_DNA-bind_4 1.2e-25 CL0123