Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01320 TCTCAACATTTCATCCATCAATGGCGGCCAAAGATTTACCTATGGACTTGCTCGAAATCACCTCTGATTCTGAAGATTCCGACACGGATCCTGACTGCGACGATTCGGAAGAAGACCCCGACTTTGATGTGCTTGAAGAAACTTGTAGCAACTTCTCCAACCTCTCACTTAAGCACAAGGCAAAAGCTCGCGTTGTGGAAGATAATTGTCTAGGTGGGCAAGTGCTGGAGGTGAATGCATCAGTTCAAGAAGGGGATAATTTTGAAAAAGTTCAAGATTTGATCGAAGCGGGACTGTTGGAGAAATTGAAAGTGGATGAATGCAAGTTGTATTTGAGGAAGAATGGTCTGAGGCTAACTGGAAGGAAGGACACACTTATACAACGCATAAAGGAGCATTTGGAGATTTTAAATGGCGGGGAGAAGAAGTATCCACCTTCTAGCTTTGTGTTGAATTGTAAAGGTGATGCATGCACTGGAGATGTTGTTTTGTTTGAGCAAAATGTCTATGAAATGTTCAACATAGCATCCAGAAGTGCCAGTGGTCCACCTTGTGGCAAAAGAATTGTTGCAGGCCGCATAGTAAAAGAAAGCTATGGTGCTGGCAAACAACAGCATACATTTACGATTGAAGTACTCTGGAGCAAAGGAGAAAAGCCTCTCCCTCCCCTTTACCCCCTACTGATTAAGGGTCGAAACCTTTATAGGTTCAAGACTTTGAGACAGAAATGGGAGGATGAAGCAAAAAGGCAGAAAATATTGCTGGAAAAACATTCAAGGGGATCTCTTGCTAGGGCAGATAGAGAAGCAAGGATACAAGAAAAGGAGAAGAGGAAAAAAATTATGGAAAATAGGGTCTCCAAAAAGGATTCATCAAGGAACCAATGTCTATCAAATTCACACATTACAAGGTCACAATATCAACAGCAACAAACAACTGTACCCACTAATCCAGGAAAGCCAGAATTTCAATCTCAAAATTCAGGTTTATCTGCCAATATAAGGAAAGAAGCATCTTATAATGTAAATAAACTGGCAGCAGCAGTAACCAACCAATGTGGTAAGTCTATTAACGCATTTACTGATCTCCATATATACAATCAGCAAGCTTGGAACAGCACAGGTGACTGTAGGAACACTTTTGGTATTGATCATATGAGGGGAGCTGATCTAAGTGCATATTACAACAATGCTGAACCCCATTTCAGAGAAAACCGAACTGTTGTTCGGAAATACGACCCTCATCATAGGATGCCTTTGGCTAATGCAAACCCCTCTCACCCGTTGATGCCCAACAGAGAAATCTATAAGCATAGCCAGGTGTGTAGACATTACTCCCGTGGGAGGTGCTATTTTGGGGACAACTGCAAATTCTTACATGATTTGAGAGACAAAGGGAATGCGTGAATTAAATTTTTTTGTGGTGGCATGATTTCATTCATGTCTTGAAATTAAACATGCTTTGCTTTTAAATTCAAAAATTGATAAATGGCTTTGGCCTTTAATTCATACAAGAGAGTTTTGTAACTTGAGTTTTTGTTAGCAATCTTGGGCTTTGTTGTTATTCCTACGAGATACCATGATTATGTTAAAAGAGGAAAATTTTATTTACCGCCTACTATTTTTTCATATAATACCTATTGATATAAAAAATTATTAAAAATCCCCCAAATTACCCTTTAACCTATTTTACTCTACTCCTGTTGTGCCTTCCCTTCCTTCTCACTTCAATCTCCCTATTTTCCAAACACCTACCATAAATTAAAAAGTGTATTCTCTCACTTACTTACATTTCACTCATTGACTTCTCACTTTGACACTTGCACCCTTTACTTTCTCTCCTCCCTTCAAGCTTACCTCTCCCCTTCTTCCTCGCGTCCTTTCTCTTTGTTTCCCTTTATTTTCTGTGTTGTTTGTGGCTCTTCCTCTCCCCCTCTACCTCATT 1944 0.3981 MAAKDLPMDLLEITSDSEDSDTDPDCDDSEEDPDFDVLEETCSNFSNLSLKHKAKARVVEDNCLGGQVLEVNASVQEGDNFEKVQDLIEAGLLEKLKVDECKLYLRKNGLRLTGRKDTLIQRIKEHLEILNGGEKKYPPSSFVLNCKGDACTGDVVLFEQNVYEMFNIASRSASGPPCGKRIVAGRIVKESYGAGKQQHTFTIEVLWSKGEKPLPPLYPLLIKGRNLYRFKTLRQKWEDEAKRQKILLEKHSRGSLARADREARIQEKEKRKKIMENRVSKKDSSRNQCLSNSHITRSQYQQQQTTVPTNPGKPEFQSQNSGLSANIRKEASYNVNKLAAAVTNQCGKSINAFTDLHIYNQQAWNSTGDCRNTFGIDHMRGADLSAYYNNAEPHFRENRTVVRKYDPHHRMPLANANPSHPLMPNREIYKHSQVCRHYSRGRCYFGDNCKFLHDLRDKGNA 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01320 461 Coils Coil 258 278 - -
Pste6g01320 461 PANTHER SAP DOMAIN-CONTAINING PROTEIN 17 456 - -
Pste6g01320 461 SMART c3hfinal6 430 455 IPR000571 GO:0046872
Pste6g01320 461 MobiDBLite consensus disorder prediction 1 32 - -
Pste6g01320 461 MobiDBLite consensus disorder prediction 12 32 - -
Pste6g01320 461 Gene3D SAP domain 81 139 IPR036361 -
Pste6g01320 461 Pfam SAP domain 93 127 IPR003034 -
Pste6g01320 461 SMART sap_9 93 127 IPR003034 -
Pste6g01320 461 SUPERFAMILY SAP domain 82 128 IPR036361 -
Pste6g01320 461 ProSiteProfiles Zinc finger C3H1-type profile. 429 456 IPR000571 GO:0046872
Pste6g01320 461 Gene3D - 424 460 - -
Pste6g01320 461 MobiDBLite consensus disorder prediction 295 321 - -
Pste6g01320 461 SUPERFAMILY CCCH zinc finger 430 454 IPR036855 GO:0046872
Pste6g01320 461 ProSiteProfiles SAP motif profile. 93 127 IPR003034 -
Pste6g01320 461 Pfam CCCH-type zinc finger 434 454 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01320 Pste-Chr6 5688072 5691666 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste6g01320 SAP 3.3e-09 CL0306