Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01317 atgatagatgctggtttcaagcaatctttgtctaggcatgtgcatgcacctactgtttttaggtgccatagagtgtcggctactaggaatggtgaagatgagattgcatacatggccaccgttcatattagtggccatgtgtttaaggggtttctgtatgatcatggtgctgatgccaaaagtgatgtgcctagtgtttcagaactacaattgggaaacaatggaagtggaaagaataattga 243 0.0 MIDAGFKQSLSRHVHAPTVFRCHRVSATRNGEDEIAYMATVHISGHVFKGFLYDHGADAKSDVPSVSELQLGNNGSGKNN 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01317 80 Pfam Domain of unknown function (DUF702) 8 58 - -
Pste6g01317 80 NCBIfam LRP1 C-terminal domain 13 56 IPR006511 -
Pste6g01317 80 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 3 78 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01317 Pste-Chr6 5671472 5676956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01317 5 79 C2H2 Transcription Factor Family AT5G12330 48.000 5.60e-19 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pste6g01317 DUF702 2.6e-19 No_clan