Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01315 atggcggaggaagccaaagccaaaggcaacgcagcattcgccggcggcgacttcagtggcgcaatccggcacttctcggacgccatcgcccttgccccgtctaaccacgttctctactccaatcgatccgccgcccacgcctctctcaaaaactacgccgaagccttaactgacgcccagaagaccgtggacctcaaaccggactggcccaagggctacagccgcctcggcgccgcccacctcggcctccgccaccaccgtgacgccgtctccgcctacaaagccggcctcgaactcgactccgacaacgccgccctcaaatccgggttggccgacgcccaagccgcggcttcccgccccccgcccaacagccccttcggcagagccttctccgggcccgacgtgtgggcccgcctgactgcggaccccaccacccgggcctatctgcaacagcctgatttcgttaagatcatgcaggacattcagaaggaccccaacaagttcaacttgcatttgagtgatcagcgggtcatgcatgccattggggttttgctcaacgttaatattcaaacccctaaagacgacgacgacgacgacgctggttcctctgaatctgaagaggaacaggacgaccctgtgccccaacccaagcccaaagtggtggaattgacggaggagaagaaggaggctagtgatgggaaggagcaggctcagaaggagaaggaagctggcaatgcggcttataagaagaaggatttcgaaaccgcgattgcccattacaccatggctttggaatttgatgatcaggatatttcctaccttactaatcgtgccgctgtttacttggagatgggcaagtttgaggaatgcattaaagattgtgaaagggctgttgaaaggggaagagaactaagatcagacttcaagatgatagctagagctttgactaggaaaggtactgcattgtttaaaatggcaaaatgctctaaggattatgactctgtcattgagactttccagaaagcacttactgagcaccgcaacccagacaccttaaagaaactgaatgaagctgaaaaggctaaaaaagaattagagcaacaagaatattttgatccaaaattggctgatgaggagagagagaaaggaaatgaattattcaaacagcagaagtatcctgaggctatgaagcattatacagaagccataaaaaggaaccccaaagatgctaaggcttacagtaacagagctgcatgttatacaaaattgggggcgatgcccgaaggtttaaaagattcagagaaatgcattgagcttgatccaaccttttcaaagggttatactaggaaaggtgcagtgcaatttttcatgaaagaatatgacaaagcaatggaaacataccaggaggggttgaaacatgaccctaataatcaggagttgcgtgatggcatcaaaagatgtgtagaacaaattaataaggctagccgtggagattttactcccgaggaattaaaggagagacaggctaaggcaatgcaagacccagagatacaggttatcctccaagaccctgttatgagacaagtattaattgatttccaggagaattccagagctgcacaggaccatataaagaatccgatggtgatgaacaagattcaaaagctgatcagtgctgggattgtccagatgaaatga 1698 0.0 MAEEAKAKGNAAFAGGDFSGAIRHFSDAIALAPSNHVLYSNRSAAHASLKNYAEALTDAQKTVDLKPDWPKGYSRLGAAHLGLRHHRDAVSAYKAGLELDSDNAALKSGLADAQAAASRPPPNSPFGRAFSGPDVWARLTADPTTRAYLQQPDFVKIMQDIQKDPNKFNLHLSDQRVMHAIGVLLNVNIQTPKDDDDDDAGSSESEEEQDDPVPQPKPKVVELTEEKKEASDGKEQAQKEKEAGNAAYKKKDFETAIAHYTMALEFDDQDISYLTNRAAVYLEMGKFEECIKDCERAVERGRELRSDFKMIARALTRKGTALFKMAKCSKDYDSVIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPKLADEEREKGNELFKQQKYPEAMKHYTEAIKRNPKDAKAYSNRAACYTKLGAMPEGLKDSEKCIELDPTFSKGYTRKGAVQFFMKEYDKAMETYQEGLKHDPNNQELRDGIKRCVEQINKASRGDFTPEELKERQAKAMQDPEIQVILQDPVMRQVLIDFQENSRAAQDHIKNPMVMNKIQKLISAGIVQMK 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01315 565 Pfam Tetratricopeptide repeat 445 477 IPR001440 GO:0005515
Pste6g01315 565 ProSiteProfiles TPR repeat profile. 444 477 IPR019734 GO:0005515
Pste6g01315 565 FunFam Putative stress-induced-phosphoprotein 1 122 190 - -
Pste6g01315 565 Gene3D - 495 565 - -
Pste6g01315 565 MobiDBLite consensus disorder prediction 210 246 - -
Pste6g01315 565 ProSiteProfiles TPR repeat profile. 376 409 IPR019734 GO:0005515
Pste6g01315 565 Pfam STI1 domain 133 186 IPR041243 -
Pste6g01315 565 Pfam STI1 domain 506 557 IPR041243 -
Pste6g01315 565 MobiDBLite consensus disorder prediction 112 132 - -
Pste6g01315 565 Gene3D - 122 190 - -
Pste6g01315 565 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Pste6g01315 565 Pfam Tetratricopeptide repeat 273 299 IPR019734 GO:0005515
Pste6g01315 565 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Pste6g01315 565 SMART tpr_5 237 270 IPR019734 GO:0005515
Pste6g01315 565 SMART tpr_5 70 103 IPR019734 GO:0005515
Pste6g01315 565 SMART tpr_5 2 35 IPR019734 GO:0005515
Pste6g01315 565 SMART tpr_5 312 349 IPR019734 GO:0005515
Pste6g01315 565 SMART tpr_5 444 477 IPR019734 GO:0005515
Pste6g01315 565 SMART tpr_5 376 409 IPR019734 GO:0005515
Pste6g01315 565 SMART tpr_5 271 304 IPR019734 GO:0005515
Pste6g01315 565 SMART tpr_5 410 443 IPR019734 GO:0005515
Pste6g01315 565 SMART tpr_5 36 69 IPR019734 GO:0005515
Pste6g01315 565 Pfam Tetratricopeptide repeat 7 67 - -
Pste6g01315 565 Pfam TPR repeat 383 424 - -
Pste6g01315 565 SUPERFAMILY TPR-like 375 488 IPR011990 GO:0005515
Pste6g01315 565 FunFam Stress-induced phosphoprotein 1 1 116 - -
Pste6g01315 565 SUPERFAMILY TPR-like 9 485 IPR011990 GO:0005515
Pste6g01315 565 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Pste6g01315 565 Gene3D Tetratricopeptide repeat domain 374 489 IPR011990 GO:0005515
Pste6g01315 565 Coils Coil 220 243 - -
Pste6g01315 565 SMART CBM 132 171 IPR006636 -
Pste6g01315 565 SMART CBM 514 553 IPR006636 -
Pste6g01315 565 FunFam hsp70-Hsp90 organizing protein 3-like 375 489 - -
Pste6g01315 565 PANTHER TPR REPEAT CONTAINING PROTEIN 2 536 - -
Pste6g01315 565 FunFam Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing) 497 565 - -
Pste6g01315 565 MobiDBLite consensus disorder prediction 189 246 - -
Pste6g01315 565 Gene3D Tetratricopeptide repeat domain 233 370 IPR011990 GO:0005515
Pste6g01315 565 Coils Coil 348 368 - -
Pste6g01315 565 FunFam Stress-induced phosphoprotein 1 234 368 - -
Pste6g01315 565 ProSiteProfiles TPR repeat profile. 410 443 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01315 Pste-Chr6 5665518 5670467 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01315 1 99 U-box Gene Family AT3G07370 30.303 1.49e-07 51.2