Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01301 GGGGGATCGAGTAGAGTCCTCTGGTTTTTTGTGAGGCCTGTGCTCTGAGAGGGGCCATAGTTTGGGACCCTTTGAACCCTAATCTCCACCGAAACCCATTTTGGCGGAAAATCCCGTGGGATAAGAAAAAGTGAAGAGGAAAATGCAGAATCACAGGCTGAAGCAGCAGCAACAACAAGCTCTGATGCAGCAAGCTCTTCTCCAACAACAGTCTCTCTACCACCCTGGCCTCCTTGCTCCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACATGCCGCAGTGTGTATGTGGGGAACATCCATACACAGGTAACTGAGCCGCTTTTGCAAGAAGTTTTTGCAGGTACTGGCCCAGTGGAAGGTTGCAAGCTTATCAGAAAGGAGAAGTCATCCTATGGATTCATTCATTACTTTGATCGTAGATCAGCTGCTCTGGCCATATTATCTCTCAATGGAAGGCATCTATTTGGGCAGCCTATCAAGGTTAATTGGGCATATGCTAGTGGTCAGAGAGAGGATACGTCAGGTCATTACAACATATTTGTTGGCGATCTAAGTCCTGAGGTTACTGATGCTACGCTGTTTGCATGCTTTTCTGTCTACCCCAGTTGTTCCGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCTAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAGGATGCACAAAGCGCCATAAATGATTTGACTGGTAAGTGGCTTGGAAGTAGACAAATACGCTGTAACTGGGCAACAAAAGGTGCTGGTGGTAATGAAGAGAAGCAAAACTCAGATGGGAAAAGTGTGGTGGAACTAACAAATGGATCATCTGCCTCTATAGTTCTTCATTTAAGGGTGGACCTGGAAGATGGTAAAGAGGCATGTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACTGTTTATGTGGGTAACCTTGCTTCAGAGGTAACTCAACTTGATCTCCATCGCCACTTCCATGCTCTTGGAGCTGGAGTGATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTTGGTTTCGTGAGATACAGTTCTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATGCCCAGTCTCTTCTATGTGGAAAACAAATTAAGTGCTCTTGGGGAAGCAAACCCACTCCACCTGGAACTGCTTCAAATCCCCTTCCCCCACCTGCTGCTGCTTCTCTGCCTGGTCTTTCTGCAACTGATATTTTGGTGTATGAGCGCCAGTTAGCAATGAGCAAGATGGGTGGTGTCCATGCCTTGATGCATCCCCAAGGGCAACATCCTCTTAAACAAGCAGCTATTGGAGCCAGCCAGGCAATATACGATGGTGGATTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAGTAACATATTGAGGTTCTCTGGATGTGGTTTAGTGCTATCTATATCCTGCCTGGTGCACATGGATTCGTGTTAAACTCTAGGGAGCTTTTTCTTTTTTTTTTTTTTACTTGACGGTGGTGTGGTAGTTACACTTACCATAATAGATAATTATGAGCAAACATTTGTATGGGCTTGTATCTTGTATGCGGTTTTCTACTTAGTAGTGATGAGAGTGTTTATGATTTTAAGAGGGGATTGTCTGTCTAGACATTTTTCTCCTCACCCATTTGGGTGTTACTATGCGATGGTTGTCATCAAAATCATCCTGTCTATATAAGCTGTTATATATTATTTCAATGAACAATCAATCTGGCAGTGTTATAAATGTGAGTGATAAGCGTATGTAGGCTCGTTGATTGTAG 1830 0.4464 MQNHRLKQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDGKSVVELTNGSSASIVLHLRVDLEDGKEACNSDAPENNPQYTTVYVGNLASEVTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSSHAEAALAIQMGNAQSLLCGKQIKCSWGSKPTPPGTASNPLPPPAAASLPGLSATDILVYERQLAMSKMGGVHALMHPQGQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01301 429 SUPERFAMILY RNA-binding domain, RBD 133 227 IPR035979 GO:0003676
Pste6g01301 429 Gene3D - 252 350 IPR012677 -
Pste6g01301 429 SUPERFAMILY RNA-binding domain, RBD 263 353 IPR035979 GO:0003676
Pste6g01301 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 346 IPR000504 GO:0003723
Pste6g01301 429 SMART rrm1_1 272 342 IPR000504 GO:0003723
Pste6g01301 429 SMART rrm1_1 55 124 IPR000504 GO:0003723
Pste6g01301 429 SMART rrm1_1 140 213 IPR000504 GO:0003723
Pste6g01301 429 CDD RRM1_PUB1 56 126 - -
Pste6g01301 429 SUPERFAMILY RNA-binding domain, RBD 38 132 IPR035979 GO:0003676
Pste6g01301 429 CDD RRM2_PUB1 138 217 - -
Pste6g01301 429 FunFam Oligouridylate-binding protein 1C 249 350 - -
Pste6g01301 429 Gene3D - 1 136 IPR012677 -
Pste6g01301 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 128 IPR000504 GO:0003723
Pste6g01301 429 FunFam oligouridylate-binding protein 1-like isoform X2 137 232 - -
Pste6g01301 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 211 IPR000504 GO:0003723
Pste6g01301 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 122 IPR000504 GO:0003723
Pste6g01301 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 332 IPR000504 GO:0003723
Pste6g01301 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Pste6g01301 429 FunFam oligouridylate-binding protein 1B-like isoform X2 1 136 - -
Pste6g01301 429 Gene3D - 137 237 IPR012677 -
Pste6g01301 429 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 52 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01301 Pste-Chr6 5614479 5620520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01301 137 339 Eukaryotic Initiation Factors Gene Family AT1G49760 26.214 2.70e-12 67.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01301 6 5614479 5620520 Pste6g01301 6 5614479 5620520 ECH