Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01235 ATGATAAAGCTATCAAATCAAACTCACTTAAGCCGGCACAAACAAGTCATTAGAGAATGCCTTCTAAATGGAGATCCTTACTTGGTTGTTTCAAGGCCAAGAACCCAACCTTGGAATCTACCAAAATAGTTTCCAAGAAGTCATCTTCAAGTAGAATCTTCCTCTCTGATTTAAGCGATGAATATTGTTCATCACTCTCTATCATGAGTGATTTATCCAATTCTCTCTTATTGGGATCAAATCTTCATATTTTCACCTACCAAGAGCTCAAAGAGATCACACACAGTTTCAGCAAATCCAACATTCTTGGGGAGGGTGGCTTCGGGAAGGTGTATAAAGGGTTTATCGATGACAGTCTTAGGCGTGGATTGAAACCTCAGGCTGTGGCAGTTAAGGCCTTGAACTTGGATGGAAAACAAGGCCATAGAGAGTGGTTGGCTGAAGTAATCATTCTGGGGCAGCTGAAGCATCGCCATCTGGTTAACTTAATTGGCTACTGCTGTGAAGATGAGCACAGACTTCTGGTGTATGAATACATGGAACGGGGCAATCTAGAGGAAAAACTTTTCAAGGGTTATTTAGCAGCCTTGCCTTGGCTAACGAGAGTCAAAATAGCAGTTGGTGCAGCAAAGGGACTTATGTTTCTTCATGAAGAAGAGAAGCCAGTCATATATAGAGATGTCAAGGCCTCAAACATTCTATTGGACGCTGATTACAATGCCAAGCTCTCGGATTTCGGTCTAGCAATAGATGGACCAGACAAGGATCAAACGCATATTACAACTCGTGTGATGGGTACACATGGTTACGCTGCCCCTGAGTACATCATGACAGGCCATTTGACAACCATGAGTGATGTATATAGCTATGGAGTAGTTCTCCTAGAGCTGCTCACAGGCAAGAAATCTGTGGACAAAAAACGACCCGCCAGAGAGCAGGATTTGGTGGAATGGGCAAGGCCTTTGTTGAAAGATGCCCACAAAGTAGAAAGAATAATGGACTCAAGACTTGAGGATCAGTACTCACCAGAAGGGGCAAGAAAGTTTGCAGCCTTGGCATACCAGTGTCTTAGCCACCATGCAAAGGCTAGGCCCACTATGCGAACCGTGGTTAGGACCTTAGAACCTCTCTTGGAACTTAAAGACATCCCAGTTGGCCCATTTGTCTACGTGGTACCCAGTGAGGTAGACAAAGATGCACCCAAAGTGAGTGAAAAGGTTACAGAAAATGAACATGTTGAGAACAACCAAGGTGACTTAAAAATAAAAACCAAAGAAGAAGAAAAGGGGGACAAAAAAGAAAAGGGTCACCACCGGCCAAGAAAAAGTCGTCGCAATAAACGTCGTGTTAAGCCATTGAAGTCTCGCGCTGTTTACTCTGACACTGCTCTTTATCAAACTCTTGGTACAAATCTGTACTCTCCCAAACAACAACCACAATAAAGAGATGGGCATGGACAACTATTTGCTTCTTTCATCTTCAATTATTCGTTATCCAATCATAGTTATACACTATGCATAGGGAGATTAAAATTTTGGTCAAATTCCTTGTATATTTACCATAAAGTTCTCAGATTAAACCACATGTAGATAACTTTTCCAAAATTAAATCAGCTCCGTTAAAAGTATGTTGCTGGGCTTTTAAAAATAAAAAACTTCACATGACCGTATTTAATTTGAGAACTTGATGGTAAAAATATAAAGAATTTGGTGTTTTGTTTTGTAAACACAAACATCTTAGAAGAAAGGAATGTATTACTGTATGTACGTCATACATCTCAGTTTTTTTTTTTTTTTTTTTTGTAGTTTGATTTTGATGTGTTCTTTTCAGAAATGCCATCACGTTTTTGAGGACTGATGTTACATGCACCTAAACTCGTCCACGTACTTCTTTAAATTATTCTGAT 1906 0.4014 MPSKWRSLLGCFKAKNPTLESTKIVSKKSSSSRIFLSDLSDEYCSSLSIMSDLSNSLLLGSNLHIFTYQELKEITHSFSKSNILGEGGFGKVYKGFIDDSLRRGLKPQAVAVKALNLDGKQGHREWLAEVIILGQLKHRHLVNLIGYCCEDEHRLLVYEYMERGNLEEKLFKGYLAALPWLTRVKIAVGAAKGLMFLHEEEKPVIYRDVKASNILLDADYNAKLSDFGLAIDGPDKDQTHITTRVMGTHGYAAPEYIMTGHLTTMSDVYSYGVVLLELLTGKKSVDKKRPAREQDLVEWARPLLKDAHKVERIMDSRLEDQYSPEGARKFAALAYQCLSHHAKARPTMRTVVRTLEPLLELKDIPVGPFVYVVPSEVDKDAPKVSEKVTENEHVENNQGDLKIKTKEEEKGDKKEKGHHRPRKSRRNKRRVKPLKSRAVYSDTALYQTLGTNLYSPKQQPQ 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01235 461 Gene3D Transferase(Phosphotransferase) domain 1 161 364 - -
Pste6g01235 461 Pfam Protein tyrosine and serine/threonine kinase 81 355 IPR001245 GO:0004672|GO:0006468
Pste6g01235 461 FunFam Serine/threonine-protein kinase BIK1 45 160 - -
Pste6g01235 461 MobiDBLite consensus disorder prediction 380 439 - -
Pste6g01235 461 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 161 364 - -
Pste6g01235 461 MobiDBLite consensus disorder prediction 416 434 - -
Pste6g01235 461 CDD STKc_IRAK 84 358 - -
Pste6g01235 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Pste6g01235 461 SMART serkin_6 78 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g01235 461 SUPERFAMILY Protein kinase-like (PK-like) 54 355 IPR011009 -
Pste6g01235 461 ProSitePatterns Protein kinases ATP-binding region signature. 84 113 IPR017441 GO:0005524
Pste6g01235 461 PANTHER OS01G0588500 PROTEIN-RELATED 34 358 - -
Pste6g01235 461 ProSiteProfiles Protein kinase domain profile. 78 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g01235 461 MobiDBLite consensus disorder prediction 380 415 - -
Pste6g01235 461 Gene3D Phosphorylase Kinase; domain 1 50 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01235 Pste-Chr6 5282218 5284669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01235 61 359 Receptor kinase-like Gene Family AT3G58690 51.475 2.66e-97 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pste6g01235 PK_Tyr_Ser-Thr 4e-48 CL0016