Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01216 TTTGTTTTGTGTGTGTGAGAAATGATGAATGATCAATGTCTCATCAGGAACAAGCCTTAGTCTCCCTTCTCTCCCAACTCGCCCTTTCCTTCGACGGTGCCGTTTTGGGATTCGCCTTGGCCTACGCCGCTGTCCGCACCCTCTTCAAATTCTCCGCCTCCTCCTCCGCCCTCCGCAAGCTCCACCGCGCCCCTTCCCTCTCCGTCTCCGACCTCCGTTCCCTCCTAGCCGATACTGTCTCCAACGCCGACGGAAACTCTGACGGTGGTACAATCGTAATTGTCCGCGGCATCGTCGACGCCAAGTCCGCCGTCGACGGCACCTGGCAGTTGAGACCTGATGTCTTGGTTTCTCGCGAGTCCGGCGATAGAGGCGTTGTTCTTCAAAGAACTCAAACGTGTTTATACAATGAATGGAAAGGCTTACTTGGATGGACTTCTGATCTTCGAGCCATATTTGCAAGATCTTGGAGACAGCAAGAATCTACATCTTTAAGGAAGGTGCCTTTTGTTCTAATTGATGTTGGGCGGCGGCCAAATGCTGAGTATGTTGTTGTTAACATGGATGGCTCAAGACATCCGTTACCTCTAACAACAGTTTATCATAAATTGCAACCTATAAATGCTTCTCCTTATACTTTCTTGCAAGCACTGTTTGGGCATGAATATCCGGTTGGACTGCTAGATGAAGAGAAGATTCTTCCATTGGGGAAGGATATCACTGCAGTTGGCCTTTGTAGTTTAAAAAATGGAATTGCCGAAATTAAGTCATGCAAAGATCTACCATATTTTCTGTCTGACTTGAGCAAAGATCAGATGATAGTAGATCTTTCCATCAAAACGAAAATACTGTTTTGGGGTGGTATTGCTCTTGGTTCAATGTCAGTGGGGATCCTTGGCTATGCAGTTGTTAGGAACTGGAATAAGTGGAAACAGTGGAAGCAACAGAGGCAGCTCCAGCAACAAAGGCAAGCGGTGAGTGATGTTGAACCACTGGTGGATGATGAGATTGAAGGCGTTCCAGATGGACAATTATGTGTTATATGTCTGATGAGGAGAAGGCGTTCTGTTTTCATTCCCTGCGGGCATCTTGTGTGTTGCCAAGGGTGTGCCATATCAGTAGAACGTGAATTGGCGCCCAAATGTCCTGTTTGTCGTCAGGAGATTCGAGATTCAGTGCGGATTTTTGAATCTTGAACAGACAGGCTGATTGTGCTGTTCACTCTGCGGCAGGAAACTTTTATGCCTCTTAATCAGAGGAATGGTTGATTTGGATAAGATCTGGAATATGGAGATTTAGGGAACAGTTGCCTTGCTCATATTTCAAATGAACTTGTTTCTTTGTATGGGGTAGATATTTTCGTGGTTGATTCGGGGTTGATTCGTAGCCTTTTCGTGGAACCTGGTAGGATTTTTTTATTTGTCCAGTTGCACTGTACATAAATATATAATTTTGCCTAACACCTATAGAATGAACTCTGATATGTTATTTTGCATGTG 1499 0.453 MSHQEQALVSLLSQLALSFDGAVLGFALAYAAVRTLFKFSASSSALRKLHRAPSLSVSDLRSLLADTVSNADGNSDGGTIVIVRGIVDAKSAVDGTWQLRPDVLVSRESGDRGVVLQRTQTCLYNEWKGLLGWTSDLRAIFARSWRQQESTSLRKVPFVLIDVGRRPNAEYVVVNMDGSRHPLPLTTVYHKLQPINASPYTFLQALFGHEYPVGLLDEEKILPLGKDITAVGLCSLKNGIAEIKSCKDLPYFLSDLSKDQMIVDLSIKTKILFWGGIALGSMSVGILGYAVVRNWNKWKQWKQQRQLQQQRQAVSDVEPLVDDEIEGVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVERELAPKCPVCRQEIRDSVRIFES 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01216 386 ProSiteProfiles Zinc finger RING-type profile. 334 374 IPR001841 -
Pste6g01216 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 386 IPR044247 GO:0004842
Pste6g01216 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 386 IPR013083 -
Pste6g01216 386 Pfam Zinc finger, C3HC4 type (RING finger) 332 379 - -
Pste6g01216 386 SMART ring_2 334 373 IPR001841 -
Pste6g01216 386 CDD RING-HC_SPL2-like 329 375 - -
Pste6g01216 386 Pfam E3 Ubiquitin ligase 140 286 IPR022170 GO:0004842|GO:0006996|GO:0016567
Pste6g01216 386 SUPERFAMILY RING/U-box 333 379 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01216 331 383 C3H Transcription Factor Family AT3G06140 39.623 1.56e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01216 6 5178949 5186039 Pste6g01216 6 5178949 5186039 ECH