Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01201 GAAGTAATCCTGTGGGGGAGGCTTGTACCAATTCCCTCCTTTCTAATGATTGTTTTTTCAACAGACCCAAAATGGCAACAATTATATTAGTGCCACCTTTACTGACTAAAAGGATTAATTATGAAAACAACATTTCATTAACTATGTCTGATGCCACGGTGGGGGACCTTACAAGCTGGAATGCAGTAAAGAAGGGTCGGATTTTGCGGGCATATGTTGTGCCTCCAACTTGCACCAAAGCTGATATATATAAGAGGGGAAGTAGGGTGGCATTGACAGAGAAGCAAGAGCAAGCAAAGATGTTTCTGAAAATTGTTTTCATAGTTTCCCTTATCTCATTCACTGGGGATGCTACTGTCCAAGACTTCTGTGTGGCAGACCTGAAGGGGGCAGATGGCCCTGCAGGGTATCCCTGCAAGCCACAAGCTAATGTGACTTCAGATGACTTTGTATATGAAGGATTAGCTAAGGAGGGAAATGTGTCAAACATAATAAATGCAGCAGTGACAGCAGCATTTGTGGCTCAATTCCCAGCTCTGAATGGACTTGACCTCTCAGCAGCAAGGCTAGACCTGGGTCCTGGTGGAGTTATCCCACTGCACACTCATCCGGGTGCCAATGAACTACTAATTGTGTTTCAAGGTCACATTCTTTGCGGATTTATATCATCATCCAACGTAGTTTATCTAAAGACACTGAAAAAGGGTGAGATTATGGTATTCCCACAAGGCTTGTTGCATTTTCAAATAGCCGTTGGGAAGAGGAAGGCCCTTGCTTTTCCTGTTTTCAGCAGTGCAAACCCTGGCCTCCAAATCCTTGACTTTGCACTCTTTGCCAGCAACTTCTCTACCCCTTTGGTCACACAGACCACTTTCATTGATTCTTCCGTAGTCAAGAAGCTTAAGGCTGTTCTTGGTGGTACTGGC 926 0.4449 MATIILVPPLLTKRINYENNISLTMSDATVGDLTSWNAVKKGRILRAYVVPPTCTKADIYKRGSRVALTEKQEQAKMFLKIVFIVSLISFTGDATVQDFCVADLKGADGPAGYPCKPQANVTSDDFVYEGLAKEGNVSNIINAAVTAAFVAQFPALNGLDLSAARLDLGPGGVIPLHTHPGANELLIVFQGHILCGFISSSNVVYLKTLKKGEIMVFPQGLLHFQIAVGKRKALAFPVFSSANPGLQILDFALFASNFSTPLVTQTTFIDSSVVKKLKAVLGGTG 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01201 285 Gene3D Jelly Rolls 93 284 IPR014710 -
Pste6g01201 285 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 93 278 - -
Pste6g01201 285 CDD cupin_OxOx 96 281 IPR001929 GO:0030145
Pste6g01201 285 SUPERFAMILY RmlC-like cupins 96 278 IPR011051 -
Pste6g01201 285 FunFam Auxin-binding protein ABP19a 93 284 - -
Pste6g01201 285 ProSitePatterns Germin family signature. 172 185 IPR019780 GO:0030145
Pste6g01201 285 PRINTS Germin signature 207 227 IPR001929 GO:0030145
Pste6g01201 285 PRINTS Germin signature 177 197 IPR001929 GO:0030145
Pste6g01201 285 PRINTS Germin signature 240 255 IPR001929 GO:0030145
Pste6g01201 285 SMART Cupin_1_3 129 275 IPR006045 -
Pste6g01201 285 Pfam Cupin 130 273 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01201 Pste-Chr6 5094977 5096043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01201 93 285 Miscellaneous Gene Families AT1G72610 65.803 4.11e-88 259