Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01196 AAACTTTCTTCTTTTTGTCTCAGAATGATGAGTGCAAGTGCAACTGCAAGAAATAGGTCTCCTTTCACACCCACTCAGTGGCAAGAGCTTGAACAACAAGCTCTTGTTTTTAAGTACATGGTTACAGGAACACCTATCCCGCCAGATCTCATCTATTCTATTAAAAGAAGTCTAGACTCTTCAATTTCTTCCAGGCTCTTCCCACACCATCCAATTGGGTGGGGATGTTTTGAAATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGGTGCTCAAAGGAAGCATATCCAGACTCCAAGTACTGTGAAAGACACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCTTCAACAACGAGCACCGCCACAAACACCTCCCAAACAATCCCATCTTATAGCAGAAACCTTTCCTTGACCAATCCCAACATCACTGCACCCTCTTTCCCTTTCTCTCCTTTGCCATCTTCTATGCCCTACCCCCAGATTCTGATTTTCCAACTCCAGATGCCACCACCCACCAGCTATTCATGGACTCCGGCCCTTATTCTCATGATGATAAGGATTATAGGCTTTACTGTGGTTGTTAATTGCTATGCTGTATTGCACTTGATGATTCTTGCTAGCAGGCATGTTCATGGAATAAGGGAAGATGTAGATGAGAGAGCTTTCTTCCCAGAAGCATCAGGATCAGCTAGGACCTATACTGACTCATATCAACAACTATCAATGAGCTCCTACAAGTCCTATTCAAACTCCAACTTTCAGAACATCAATGATACCGCCAACCAAAGACAGCAAGAGCAACAACACTGCTTTGTTTTGGGGACTGACTTCAAATCAACAAGACCAAACAAAGAGAAAGAGGATGAGACAACAAGTCAGAGACCCCTTCACCGTTTCTTTGGGGAGTGGCAGCAAAAGAACACAGATTCCTGGCTAGATCTTGCTTCCAACTCCAGAATCCCAACCGGTGATGATCCTGCTTCTACTTCCCTACTCTCATTATCATGCCCTTTTTAA 1065 0.4432 MMSASATARNRSPFTPTQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDSSISSRLFPHHPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEVSSTTSTATNTSQTIPSYSRNLSLTNPNITAPSFPFSPLPSSMPYPQILIFQLQMPPPTSYSWTPALILMMIRIIGFTVVVNCYAVLHLMILASRHVHGIREDVDERAFFPEASGSARTYTDSYQQLSMSSYKSYSNSNFQNINDTANQRQQEQQHCFVLGTDFKSTRPNKEKEDETTSQRPLHRFFGEWQQKNTDSWLDLASNSRIPTGDDPASTSLLSLSCPF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01196 346 Pfam QLQ 13 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pste6g01196 346 Pfam WRC 79 121 IPR014977 -
Pste6g01196 346 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pste6g01196 346 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Pste6g01196 346 PANTHER GROWTH-REGULATING FACTOR 5 12 142 IPR031137 GO:0005634|GO:0006351|GO:0032502
Pste6g01196 346 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pste6g01196 346 MobiDBLite consensus disorder prediction 111 140 - -
Pste6g01196 346 MobiDBLite consensus disorder prediction 119 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01196 Pste-Chr6 5076619 5078052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01196 1 121 GRF Transcription Factor Family AT3G13960 70.968 1.76e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Pste6g01196 WRC 1.9e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01196 6 5076619 5078052 Pste6g01196 6 5076619 5078052 ECH