Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01188 ATCTCACATGATTATGACTATGATACACCTTCAAAGGGGGGAAAAAAGAAATGGGAAAACTTTCACCCCAACCATAACAAGCTTTAAAGTTTGAGCTCAAAGTCCAACATTCCAAACTTGCATAGAGAGATACTAGAAGGAGTTCAGATTTTGGGGGGGAGAGAAAGATCTGTAGTGGTGTAAGTTTGTGGGGATTGTTTTCTTGAGAAAAGAGGAAAGCGGTGTGTGTGAAAAAGTGTGTTAATATGAGTAACTGGTTGGGCTTCTCTCTGACTCCACACTTGAGGATTGATGAAGAATTTGGAAGAGAAAACCAAGAGCGTGGAGGAGGAGGAGCCTACCCTCATGATTCTTCTCACCCTCACTTGTCTGTTATGCCTTTGCGCTCTGATGGCTCTCTCTGTGTTGCTGACTCCTTTACCCACTCTGCCACACCTCAAGAATGGAGATATGATAGTACAATAGGTGGAGGGAATTCCAGTGAAGAAGGTCCAAAGCTTGAAGACTTCTTAGGTTGCTACTCAAACTCCCCCACTAAAGTCTTTTGCCAAGACTCTCAACATGCCCAAAACCAAAGCCATAACAATGTTTCCAAAATCAATGTTAATGTGGCACCAAGTTTTTGCACCAATGCTGAAATTGAAACTAGGGAGAATCTCAGCACCCCTTCTTCCTTGCTCCAATCTTTCCATGCATATAATGATAACTCACATGCCCTTATCCCCACCAATGGCATGTACAAGTCCTGGTTGGCACAAACTCAGTTTTCTGATGGGAAGCCTTCAGCTGAGGCGAATGGGTGTAATTTCCAATCCCTGTCCCTCACTATGAGCCCCAGTGTGCAAAATGGGGTTGGTGCAATTTCCTCTGTTCAAGTGAGTGAGGACAATAGGAAACGAGTCATGGCAAAATCTCATGCTAAAGAACCAGTCCCTCGCAAATCTATCGACACTTTTGGGCAGAGAACATCTCAATATCGCGGTGTGACAAGGCATAGATGGACTGGGAGATATGAGGCCCATTTGTGGGATAATAGTTGCAGAAAGGAAGGGCAAACAAGGAAAGGAAGACAAGGTGGTTATGATAAGGAAGAAAAAGCAGCAAAGGCATATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAAAAGGAACTTGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGAGCATCTGTGTATAGAGGTGTGACAAGACACCATCAACATGGAAGGTGGCAGGCCCGAATAGGAAGGGTTGCAGGAAACAAGGACTTGTATCTTGGTACATTTAGCACACAAGAAGAAGCTGCTGAAGCATATGACATAGCAGCAATCAAGTTCAGAGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTGAAGAGAATCTGCTCAAGCTCCACTCTCATAGCAGGAGATCTTGCAAAACGGTCTCCTAAAGAATCATCATCTCTGGTTGCTGCGGAGGACTTCAATTCATGCAGTTCATCGATGCCATCTCAGCCGGCTCCTTTGGCTGTAACTGATGGTGAACATTCTGATGAATTATCCAACATGATGTGGAATGCTAACAGTGATGAGCAAGCACAGAATGAGAGTGCTAACATCAACAATGTCACTGAATCATCACCACAGCAGATTTCACCAAGCAGCAAGGATGCCTTGAACCCTCAAAGCCCCAAGTGTTCTGTGGGGCTACCCAATGAGTTTGGAGTCAGTGGAGCAGACTATGGACATGGGTACTTCACCCTTGATGGACCAAAATATGATGATGGGAACAATGAAAACGACCACATGAACACCAACAGGCTCGGAAATTTGGGAATGGTTAATCAAGTTCCAATGTTTGCTCTGTGGAATGAGTGA 1949 0.4418 MSNWLGFSLTPHLRIDEEFGRENQERGGGGAYPHDSSHPHLSVMPLRSDGSLCVADSFTHSATPQEWRYDSTIGGGNSSEEGPKLEDFLGCYSNSPTKVFCQDSQHAQNQSHNNVSKINVNVAPSFCTNAEIETRENLSTPSSLLQSFHAYNDNSHALIPTNGMYKSWLAQTQFSDGKPSAEANGCNFQSLSLTMSPSVQNGVGAISSVQVSEDNRKRVMAKSHAKEPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAAKAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKESSSLVAAEDFNSCSSSMPSQPAPLAVTDGEHSDELSNMMWNANSDEQAQNESANINNVTESSPQQISPSSKDALNPQSPKCSVGLPNEFGVSGADYGHGYFTLDGPKYDDGNNENDHMNTNRLGNLGMVNQVPMFALWNE 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01188 567 FunFam AP2-like ethylene-responsive transcription factor 341 402 - -
Pste6g01188 567 SUPERFAMILY DNA-binding domain 341 402 IPR016177 GO:0003677
Pste6g01188 567 CDD AP2 341 402 IPR001471 GO:0003700|GO:0006355
Pste6g01188 567 PRINTS Ethylene responsive element binding protein signature 382 402 IPR001471 GO:0003700|GO:0006355
Pste6g01188 567 PRINTS Ethylene responsive element binding protein signature 244 255 IPR001471 GO:0003700|GO:0006355
Pste6g01188 567 SMART rav1_2 342 406 IPR001471 GO:0003700|GO:0006355
Pste6g01188 567 SMART rav1_2 243 312 IPR001471 GO:0003700|GO:0006355
Pste6g01188 567 ProSiteProfiles AP2/ERF domain profile. 342 400 IPR001471 GO:0003700|GO:0006355
Pste6g01188 567 FunFam AP2-like ethylene-responsive transcription factor ANT 242 308 - -
Pste6g01188 567 MobiDBLite consensus disorder prediction 22 43 - -
Pste6g01188 567 MobiDBLite consensus disorder prediction 438 458 - -
Pste6g01188 567 CDD AP2 242 308 IPR001471 GO:0003700|GO:0006355
Pste6g01188 567 ProSiteProfiles AP2/ERF domain profile. 243 306 IPR001471 GO:0003700|GO:0006355
Pste6g01188 567 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 79 477 - -
Pste6g01188 567 Pfam AP2 domain 341 392 IPR001471 GO:0003700|GO:0006355
Pste6g01188 567 Pfam AP2 domain 243 298 IPR001471 GO:0003700|GO:0006355
Pste6g01188 567 Gene3D AP2/ERF domain 242 308 IPR036955 GO:0003700|GO:0006355
Pste6g01188 567 Gene3D AP2/ERF domain 342 402 IPR036955 GO:0003700|GO:0006355
Pste6g01188 567 MobiDBLite consensus disorder prediction 485 506 - -
Pste6g01188 567 SUPERFAMILY DNA-binding domain 242 308 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01188 Pste-Chr6 5035869 5039394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01188 1 430 AP2-EREBP Transcription Factor Family AT1G72570 50.429 7.32e-135 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Pste6g01188 AP2 1.7e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01188 6 5035869 5039394 Pste6g01188 6 5035869 5039394 ECH