Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01184 ATGCTGAAAGAGATGGGAAGGAGTCCTTGCTGTTCTAAAGAAGGCTTGAACAAAGGAGCATGGACAGCTCTGGAAGATAAAATTCTGACAGAATACATTGGCACTCATGGTGAAGGAAAATGGAGACACTTGCCCAAGAGAGCAGGTCTTAAGAGATGCGGGAAAAGTTGCAGGCTCAGATGGTTGAATTATCTAAGACCTGGCATCAAAAGAGGCAACATTACTAATGATGAAGAGGACCTTATAATCAGGCTTCACAATCTTCTTGGAAACAGGTGGTCCTTGATTGCTGGACGGCTTCCAGGACGAACAGACAATGAAATCAAGAATTATTGGAACACCAATATTGGAAGGAAACTTCAAAATGGTGCAGCAGGAAGCATTTTAAACACAGTTCAACAAGATCAAAACGTTAAAAACATTGAGTGGCACTATGATAAGGGTTCATGTCTTGTTCAGACTAAAGCAACAAGGTGGACCAAGGTCACAGTCACTAATGAAATTAGTCAGCATAATGAAATGATTATCAAGAGCAATGTTGGTGATAACAAAATGAAGGCATTTTCAGTGTCTCCATCTTCAGACATTAAGAATGACCCAGTGTTGGATTTCATGGAAGACCTTGAGATGGATGGAAATTTCTTCTCGGAGCTTCTTCAGAAGGATTTGCCCGAATCATATTGTTGTCAGGAAAATAAGATACTGGAAGATAATGGTAACCCTAGCATAGTCGACCGAGGCTATGTATCTCCAAAATCATCCAGTGATACCACTCAGTTCCCTTGGGGTGATTCATTGTATGATACAAATTTTGATTTTCTACCAGTCACTACATTTATGGAGTCCGGATTTGATTGGCTCTCAAGTCTGAAGTAA 876 0.4041 MLKEMGRSPCCSKEGLNKGAWTALEDKILTEYIGTHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPGIKRGNITNDEEDLIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGRKLQNGAAGSILNTVQQDQNVKNIEWHYDKGSCLVQTKATRWTKVTVTNEISQHNEMIIKSNVGDNKMKAFSVSPSSDIKNDPVLDFMEDLEMDGNFFSELLQKDLPESYCCQENKILEDNGNPSIVDRGYVSPKSSSDTTQFPWGDSLYDTNFDFLPVTTFMESGFDWLSSLK 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01184 291 Gene3D - 18 70 - -
Pste6g01184 291 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Pste6g01184 291 FunFam MYB-related transcription factor 17 70 - -
Pste6g01184 291 SMART sant 17 67 IPR001005 -
Pste6g01184 291 SMART sant 70 118 IPR001005 -
Pste6g01184 291 CDD SANT 20 65 IPR001005 -
Pste6g01184 291 Gene3D - 73 144 - -
Pste6g01184 291 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 182 - -
Pste6g01184 291 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Pste6g01184 291 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Pste6g01184 291 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Pste6g01184 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Pste6g01184 291 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Pste6g01184 291 CDD SANT 75 116 IPR001005 -
Pste6g01184 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01184 Pste-Chr6 5014441 5016343 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01184 5 120 MYB Transcription Factor Family AT2G16720 75.000 4.47e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste6g01184 Myb_DNA-binding 1.5e-12 CL0123