Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01181 AATATGGGTAGACGACCCTGCTGCCCTAAAGAGATCAACAAAGGTGCTTGGTCTCGAGAAGAAGATGATATACTCTCTAAATATGTTGCCATCCATGGAGAAGGAAAATGGCAGAAGGTTGCCCAAAATGCAGGTTTAAAACGTTGTGGAAAAAGTTGCAGACAAAGATGGTTGAATTATCTCAAGCCTGGTATAAAAAGAGGCGACATCTCTGTGGATGAAGAGGATATGATTATAAGACTTCATCGTCTTCTTGGTAACAGATGGGCATTGATAGCAAAGAGGCTACCTGGACGAACAGACAACGAAATCAAGAACTATTGGAACACTAATCTGTCAAAGAAGTTACAAAAACAATCTAGATCATGTGTTTCTTCACCTCAACACAAACGTCACGAAAGAGAGGAGGCCAAACAAGTGCACGTAGCACCCGAAGCTCCACGGCCTAGGAGAGTTAATGCAGTTGAGTACAGTAAAATATTGGAGAATGGTGGGTGTGGTAATAGGCGTAGTAGTACTACTCAAAGTCCCTCAAATAAAGTAGAGGGTAGCAGTGAAGAAGCTTCTTTTAGTGATTTCCTCATCGATATTGATCAAAATCAATTGTTGATTGCTGACGATTCCAACTCAAAAGTTCCACAAATGGAAGAAGAGAGCAACAAGAAGATAGGCTTAACCAACAGTCCTAGTTCATCATCACCTTCTGATCAATGTCACCATCTTTTACCTGAGAAATTTGATCCTCTTGAAACCCTTTTGGATGTGGAGCTTAAGAAGATGGCTTCCTTTCTTGGACTTGAAAATGATTGA 810 0.4074 NMGRRPCCPKEINKGAWSREEDDILSKYVAIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISVDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQKQSRSCVSSPQHKRHEREEAKQVHVAPEAPRPRRVNAVEYSKILENGGCGNRRSSTTQSPSNKVEGSSEEASFSDFLIDIDQNQLLIADDSNSKVPQMEEESNKKIGLTNSPSSSSPSDQCHHLLPEKFDPLETLLDVELKKMASFLGLEND 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01181 269 Gene3D - 71 142 - -
Pste6g01181 269 MobiDBLite consensus disorder prediction 126 145 - -
Pste6g01181 269 FunFam MYB-related transcription factor 13 66 - -
Pste6g01181 269 MobiDBLite consensus disorder prediction 208 240 - -
Pste6g01181 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pste6g01181 269 CDD SANT 16 61 IPR001005 -
Pste6g01181 269 Gene3D - 8 67 - -
Pste6g01181 269 MobiDBLite consensus disorder prediction 220 238 - -
Pste6g01181 269 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pste6g01181 269 SMART sant 66 114 IPR001005 -
Pste6g01181 269 SMART sant 13 63 IPR001005 -
Pste6g01181 269 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pste6g01181 269 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Pste6g01181 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 65 IPR017930 -
Pste6g01181 269 MobiDBLite consensus disorder prediction 165 186 - -
Pste6g01181 269 FunFam Transcription factor TT2 70 140 - -
Pste6g01181 269 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pste6g01181 269 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pste6g01181 269 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 209 - -
Pste6g01181 269 MobiDBLite consensus disorder prediction 118 187 - -
Pste6g01181 269 CDD SANT 71 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01181 Pste-Chr6 4987354 4988678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01181 2 119 MYB Transcription Factor Family AT4G34990 62.185 4.40e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste6g01181 Myb_DNA-binding 8.3e-16 CL0123