Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01166 ATGGAACTCTACTCTTGGATTCTGATATTTGGATCACTGTTAATTTCTTTCACATTTTTCACTGTCACCATGCTTGGATGGTGCATTAATACCAATGACATACCATCCTCCTTTCCTACAACAGCCTTAAAGTTCTCTCCGTGCTTGAGTTTAGAGTCTCAGTCAATTACCTTCCATTACAAGACTGCAGAAGCCACAAACCAAACTGAATGTGTTATCTGCTTGGCAAGTTTTGAAGAAGAGGAAAGTGTCCGAAAGCTTCACACATGCAACCACATCTTTCATACCTCTTGCATTGACCAATGGCTTGCCTCTCATTCTGGCTGTCCACTGTGCCGCACTCAGGTTGACAGTGTCAATTCCCCAAATAATAGTTTGCCTTTGCAACAAAATCATCACATGATCATGGTCATTGTTAACTCCTGA 426 0.4155 MELYSWILIFGSLLISFTFFTVTMLGWCINTNDIPSSFPTTALKFSPCLSLESQSITFHYKTAEATNQTECVICLASFEEEESVRKLHTCNHIFHTSCIDQWLASHSGCPLCRTQVDSVNSPNNSLPLQQNHHMIMVIVNS 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01166 141 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 58 121 - -
Pste6g01166 141 SUPERFAMILY RING/U-box 57 119 - -
Pste6g01166 141 Pfam Ring finger domain 70 113 IPR001841 -
Pste6g01166 141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 122 IPR013083 -
Pste6g01166 141 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Pste6g01166 141 SMART ring_2 71 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01166 Pste-Chr6 4906089 4906514 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01166 54 126 C3H Transcription Factor Family AT5G17600 50.667 2.23e-19 80.9