Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01141 AGGTGGTGTAATAAGTAGTAAGTAGTGTGTGGAGGATGGCTGGTGAGAGACTACACTTGAAGTTGAACTTGATTGACGTGTGTTAATGCAGAGAGAGAAGAAATAGAGAGAGGGAGAGACTTCACCGTTGTTCAAAGAGAAGTGAAAGTCTGAATAGTGAGTGGATGATGAAGTGGAGGAGTACGCGACACTAGTGGCAGTGGGTACCACTTTCAGTTCCAGTTTCTGTTTCAGATTGAGAGTTTCTTCTTCTAAACTTGAAGTACATGCACAGCTTTTGGTATATACTACTTTGGAAAATGTTACTGTTGATTGAGAAGGGCTATAGAGTGTAGACCAATCCTGGTTTTCAGATCATAGTTTTTCACTCTTTTGAAGGCAAGTGAATTGCTACTCTTATAGGCAAACCTTGATCCATAGTGGAAACAATGAAGAATTTGTGTGAGAGGCACTCTGGTCCTACCCATTTAGCATCTCCTTATGCTCTTGGATGCTCGTCATGGGGGACATCCTCTGAATCTGATGGCCAACAATCATCCATGTCCAAAAGTTTGACCTTGAAAATGAGTGTTCTGCCGCAACAAGGCCAAAATACTAATCCATTGAGTTTTCAATTTCAAGACCGAGATTCATCTTCAACTCAATCAACCGGTCAGTCTTATCCTGAAGTTGGTTCAGCACAATCAGGTCAAATTTCTGTCCAGTGTAGCAATTCTTCTGCTTGTTCTACACTTAACACAACTGTTGGAAAGAGTATGGAAGGTGTCATCAGGTCATCTGTGGGGGGTCATGATTTTACTTCACCTCCTTCGCAACTGTGTCCCAACCAATCACTTGCTCATACTACATTCCACTTTGGTGAGCCATGCTTTGGTGGTGTACTAGCTACTCCATATGGGCCACAGCCTAATATTCATCATGCTCATCTAATTGGAATGACTCCTGCTCGAATTCCTCTGCCGCTTGATCTCAGTGAGGAGCCCATATATGTGAATGCAAAGCAGTACCATGCTATTCTGAGGCGCAGGCAGTATCGTGCGAAACTTGAAGCACAGAACAAACTCATCAAAGAGCGGAAACCATATCTTCACGAGTCTCGCCATCTACATGCGCTAAAGAGAGCTAGAGGTTCTGGTGGACGCTTTTTGAATACCAAAAAGCCACAAGAGTCAAAGCTCACTGCAGCGAACTATGGCCTAGATATTTCAAGGTGTACCCAGTTGAATCTGAGGGGAAATATGTCAGAATCTAAGGTGCATCCAGTAGAAAACTTAAATTACAAAGATGGTGCTTCCACAACCACCTGTTCTGATGTTACTAGTGCATCTAATAGTGATGGTGTCTTTCGGCAACATGAGTCAGACTTTCGGTTATGCTTTTACCCTTCTCATATTGGAAGGAACATGCAGGATTACTCCACCGATGGTGGTGGTGGAAACCAACATCATCTATCAGTCCTTATGTGACAAACTTTTATGGCACACTAGCAAGTTATTCTTCAGCATTCAGTTGGAGAAGGTAGCCTGTGTTCCATAGGGAAGTCATCCTTGGCTCATTTACGTTTTGTCCTACTGATATGTTCATGTTAGTTATTTTGGAACAAAGTTCTATTTTCATATGTTGATGCCCGCAAAATGTTTGGGCAAAGAATTGAAGCACATAACTGGTTAGTTACAGACGAAATTATTTTCTTTATGTTGATGTAAGATTGGAAAA 1716 0.4202 MKNLCERHSGPTHLASPYALGCSSWGTSSESDGQQSSMSKSLTLKMSVLPQQGQNTNPLSFQFQDRDSSSTQSTGQSYPEVGSAQSGQISVQCSNSSACSTLNTTVGKSMEGVIRSSVGGHDFTSPPSQLCPNQSLAHTTFHFGEPCFGGVLATPYGPQPNIHHAHLIGMTPARIPLPLDLSEEPIYVNAKQYHAILRRRQYRAKLEAQNKLIKERKPYLHESRHLHALKRARGSGGRFLNTKKPQESKLTAANYGLDISRCTQLNLRGNMSESKVHPVENLNYKDGASTTTCSDVTSASNSDGVFRQHESDFRLCFYPSHIGRNMQDYSTDGGGGNQHHLSVLM 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01141 345 ProSitePatterns NF-YA/HAP2 subunit signature. 187 207 IPR018362 GO:0003677|GO:0016602
Pste6g01141 345 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 184 239 IPR001289 GO:0003700|GO:0006355
Pste6g01141 345 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 34 304 IPR001289 GO:0003700|GO:0006355
Pste6g01141 345 PRINTS CCAAT-binding transcription factor subunit B signature 216 239 IPR001289 GO:0003700|GO:0006355
Pste6g01141 345 PRINTS CCAAT-binding transcription factor subunit B signature 185 207 IPR001289 GO:0003700|GO:0006355
Pste6g01141 345 MobiDBLite consensus disorder prediction 53 83 - -
Pste6g01141 345 ProSiteProfiles NF-YA/HAP2 family profile. 182 242 IPR001289 GO:0003700|GO:0006355
Pste6g01141 345 SMART cbf3 181 242 IPR001289 GO:0003700|GO:0006355
Pste6g01141 345 Gene3D - 182 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01141 Pste-Chr6 4761136 4765713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01141 9 343 CCAAT-HAP2 Transcription Factor Family AT1G17590 43.895 1.94e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pste6g01141 CBFB_NFYA 1.3e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01141 6 4761136 4765713 Pste6g01141 6 4761136 4765713 ECH