Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01133 atgggtccgaatgctgcggcggcgaaacaagcggagaagctccgaattgacggcaacacttacttcaaaaaagaccgtttcggtgccgccatcgatgcttacaccgaggcgattacgctgtgccctaatgttccggtttattggacgaatcgcgcgctgtgccatcttaaacgcaatgattgggagagagtggaggaagattctcggaaggcaattcagttggacagctattcagttaaggtttttgttgttgatttcctttga 264 0.0 MGPNAAAAKQAEKLRIDGNTYFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHLKRNDWERVEEDSRKAIQLDSYSVKVFVVDFL 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01133 87 SUPERFAMILY TPR-like 10 82 IPR011990 GO:0005515
Pste6g01133 87 Gene3D Tetratricopeptide repeat domain 8 84 IPR011990 GO:0005515
Pste6g01133 87 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Pste6g01133 87 SMART tpr_5 11 44 IPR019734 GO:0005515
Pste6g01133 87 SMART tpr_5 45 78 IPR019734 GO:0005515
Pste6g01133 87 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 6 81 IPR045200 GO:0000209|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01133 Pste-Chr6 4726127 4730520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01133 4 80 U-box Gene Family AT3G07370 70.130 7.31e-34 115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02524 5 17751488 17760199 Pste6g01133 6 4726127 4730520 PCT