Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01132 atgtctgattattctcttattttaattataattaaggctttggatcttgggagaggtgccaatcccaagggctatatggtagaagaaatatggcaagagcttgcaaaagcgaaataccttgagtgggaacgatcgtcgtctaaaagatcatgggaattacagagcttgaaagaagcttgtgagtctgccctgaaggaaagacattttcttgatttctcccaaatggaaggatttgtagacgatcctactaattcccatttggaacaattagaagctttagaaagagtctttaataaagctgcagaacctgacacacctactgagattggcttgtcgagtgaacaggtgccagattatttatgctgtagaatcacactcgacatttttcatgatcctgtaatcactccaagtggactcacatatgagagagcagtgattcttgaacatcttcagaaggtgggtaaattcgatcctatcactcgagaaccacttgatccatcacagttagttccaaacttggccattaaggaagcggtcgaggcattcttggacaaacatgggtgggcttacaaggtagattaa 582 0.0 MSDYSLILIIIKALDLGRGANPKGYMVEEIWQELAKAKYLEWERSSSKRSWELQSLKEACESALKERHFLDFSQMEGFVDDPTNSHLEQLEALERVFNKAAEPDTPTEIGLSSEQVPDYLCCRITLDIFHDPVITPSGLTYERAVILEHLQKVGKFDPITREPLDPSQLVPNLAIKEAVEAFLDKHGWAYKVD 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01132 193 CDD RING-Ubox_CHIP 116 186 IPR045202 -
Pste6g01132 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 192 IPR013083 -
Pste6g01132 193 ProSiteProfiles U-box domain profile. 115 189 IPR003613 GO:0004842|GO:0016567
Pste6g01132 193 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 11 191 IPR045200 GO:0000209|GO:0061630
Pste6g01132 193 Pfam U-box domain 116 188 IPR003613 GO:0004842|GO:0016567
Pste6g01132 193 SUPERFAMILY RING/U-box 108 190 - -
Pste6g01132 193 SMART Ubox_2 119 182 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01132 Pste-Chr6 4724416 4725940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01132 12 192 U-box Gene Family AT3G07370 67.403 7.04e-87 255