Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01123 atggaatccgcgtcttctttacgagtgcgtcggatgctttcaaattatttcagggaatccgcgtcttcttcatcatccttctcaaaagtgtctacaacgtacgatgtgttcatcagttttaggggaaaagacactcgaacgaagtttgtttctcatctccattatgccctctcaaaagctggactcaacactttccttgacgatgacagtctacaaagaggaaaggaactgaattttgaactaaggagagcaatagaaaggtcaaagatacagttggttgtgttctccaaaagctatactgaatctagttggtgtcttgatgagcttgaacatatcatgagatgcgagaaacttaatcagaaagagaccacagttgtgcccatattttatgatgttgacccatcagttgtacgtcatcagagcgatgattttggaaaagctttgaaagaaactgctgagagaagatatcccggagtagatgcagaagtcaagttgagctggtggagaagtgctctcaccagagctgcaaatttatctggttggaattccatgaatcacaggagtgaatctgaactagtggagaaaattgttgaagacattctcaaaaaactaggctatggagacttgtttactaccaaatttcctgttggattagtttctcgtgtaagaaaagtgattagattaatcgacaatcaatccaacaaagtctctatcatagggatatggggaatgggaggagtgggtaagactaccactgcaaaagccatctacaaccaacttcgtcataaattcatggaaagaagtttcattgaagatattagacaagtttgtcaaacagataaaagaggacatactcttttacagaaaaagcttctttcagatatcttaaagaaagagatcaaggtacttagcgttgggatgggaaaaactatgatcaaggaaaggctttctggaaaaagcatgctcattgtacttgatgatgtgaatgagtttggccaattagaagacctctgtggaaatcgtgagtggtttggtcctagaactgtaataatcattactactagagatgtacacctactaaagcaacttgaagttgattacgtttataaaatggaggaaatggatgaaaatgagtcccttgagctttttagttggcatgcttttggacagtcaaaaccaatagaagacttcaaagaacttacaagaaatgtagttgcttattgtggaggactaccactagctcttcgagtccttggttcttatttaattgggaggcaaaagcagttatgggatagtgtgttgtcaaaactggaaaaaattcccaatgatcaagttcaaaagatattaagaataagctttgatggtttaagtgatcctatggaaaaggatatattccttgatatatgttgtttctttattggcaaagacagaggctatgttacagatatactaaatggttgtggactatgtgctgatattggaataactgttctcatagaacgtagtctcataacagttgaaaagaaaaacaaacttggaatgcatcatttgctacgagacatgggaagagagataatttgtgaaagttcacgaaacgaaccgtggaagcgtagtcgattgtggtttcaagaggatgttcttgatgtactcacaaatagtactggaacaatggctattcagggaataactctaaaattgaatttcaccagtagagattgctttgaagctcacacctttaaagaaatgaagagattgagactgttgcaacttgatcacgtacaactcactggaaattatgagtatctatcaaagcaactgaaatggatatgttggcaagggtttcatttaaaaaccattcctaacaactttgatatgaaaggtgtaattgccattgatttaaaacacagtaatcttatactggtttggaaaaaaacccaggttttgccatggctaaaaatcctgaatcttagtcattccaagtcattgattgaaactcctgactttttaggactaccaagtcttgaaaagctcattctcaaagattgtccaagtttgcaaaaggtacaccaatctgttggaagtctccacaatctgttattgataaatttgaaggactgtacaagcgtaaacaacctcccaagggagacatacaagttgaaatctgtgaaaactctcatcctatctggttgtacaaatattgacaaattagaagaggatatagtgcagatggaatccttgacaactcttgttgcagataatactgctgtgaaacaagtgcccttttccattgtaaattcaaaaagcattggatacatatccctttgtggatttgaaggattatcacgtaatgtttttccttctatcatttggtcttgggtgtcaccaacaatgaatcccctgtcttatattcgtccgtttggtggcatatcatcatctatagtttccatggatgtgaagaataataatttgggtgatctagaactcatgcttagcaacctttcaaatcttcgaagtgttttggtgcagtgtgacacagactttgagctacgttaccaggaagtcctcaacactcttagcaagatgatgtctgagggattggcaaccggtgagtcttgtgatgtttttcagccaactgacagtgatccttcttggttggcctttatgggcgagagacattcggtgtatttcactattcctgaggattgtcgcctgaagggaatgattttatatgttgtctatttttcagctcatgaaaacatagcaactgaatcgcttattagtgtgttgattgttaattacacaaagtgcacgatccagatatacaagcgagacacaataatttcctttaatgatttagattgggagggcataatttctcatttgggatatggagacaaggttgaaatttttgtgacgtttggagatgggttggttgtcaagaagacaagtgcttatctaatgtatgataattcaattgatagagccttctcctga 2994 0.0 MESASSLRVRRMLSNYFRESASSSSSFSKVSTTYDVFISFRGKDTRTKFVSHLHYALSKAGLNTFLDDDSLQRGKELNFELRRAIERSKIQLVVFSKSYTESSWCLDELEHIMRCEKLNQKETTVVPIFYDVDPSVVRHQSDDFGKALKETAERRYPGVDAEVKLSWWRSALTRAANLSGWNSMNHRSESELVEKIVEDILKKLGYGDLFTTKFPVGLVSRVRKVIRLIDNQSNKVSIIGIWGMGGVGKTTTAKAIYNQLRHKFMERSFIEDIRQVCQTDKRGHTLLQKKLLSDILKKEIKVLSVGMGKTMIKERLSGKSMLIVLDDVNEFGQLEDLCGNREWFGPRTVIIITTRDVHLLKQLEVDYVYKMEEMDENESLELFSWHAFGQSKPIEDFKELTRNVVAYCGGLPLALRVLGSYLIGRQKQLWDSVLSKLEKIPNDQVQKILRISFDGLSDPMEKDIFLDICCFFIGKDRGYVTDILNGCGLCADIGITVLIERSLITVEKKNKLGMHHLLRDMGREIICESSRNEPWKRSRLWFQEDVLDVLTNSTGTMAIQGITLKLNFTSRDCFEAHTFKEMKRLRLLQLDHVQLTGNYEYLSKQLKWICWQGFHLKTIPNNFDMKGVIAIDLKHSNLILVWKKTQVLPWLKILNLSHSKSLIETPDFLGLPSLEKLILKDCPSLQKVHQSVGSLHNLLLINLKDCTSVNNLPRETYKLKSVKTLILSGCTNIDKLEEDIVQMESLTTLVADNTAVKQVPFSIVNSKSIGYISLCGFEGLSRNVFPSIIWSWVSPTMNPLSYIRPFGGISSSIVSMDVKNNNLGDLELMLSNLSNLRSVLVQCDTDFELRYQEVLNTLSKMMSEGLATGESCDVFQPTDSDPSWLAFMGERHSVYFTIPEDCRLKGMILYVVYFSAHENIATESLISVLIVNYTKCTIQIYKRDTIISFNDLDWEGIISHLGYGDKVEIFVTFGDGLVVKKTSAYLMYDNSIDRAFS 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01123 997 Gene3D Ribonuclease Inhibitor 564 866 IPR032675 -
Pste6g01123 997 SUPERFAMILY Toll/Interleukin receptor TIR domain 23 181 IPR035897 -
Pste6g01123 997 Gene3D - 28 209 IPR035897 -
Pste6g01123 997 SMART till_3 33 178 IPR000157 GO:0007165
Pste6g01123 997 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 468 IPR027417 -
Pste6g01123 997 Pfam TIR domain 34 205 IPR000157 GO:0007165
Pste6g01123 997 Gene3D - 211 368 IPR027417 -
Pste6g01123 997 PRINTS Disease resistance protein signature 717 733 - -
Pste6g01123 997 PRINTS Disease resistance protein signature 238 253 - -
Pste6g01123 997 PRINTS Disease resistance protein signature 315 329 - -
Pste6g01123 997 PRINTS Disease resistance protein signature 408 422 - -
Pste6g01123 997 FunFam Disease resistance protein (TIR-NBS-LRR class) 30 205 - -
Pste6g01123 997 SUPERFAMILY "Winged helix" DNA-binding domain 443 550 IPR036390 -
Pste6g01123 997 ProSiteProfiles TIR domain profile. 32 204 IPR000157 GO:0007165
Pste6g01123 997 Pfam NB-ARC domain 222 448 IPR002182 GO:0043531
Pste6g01123 997 FunFam Disease resistance protein (TIR-NBS-LRR class) 375 457 - -
Pste6g01123 997 SUPERFAMILY L domain-like 579 839 - -
Pste6g01123 997 Gene3D - 373 457 IPR042197 -
Pste6g01123 997 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34 839 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01123 Pste-Chr6 4673616 4679873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01123 31 765 WRKY Transcription Factor Family AT4G12020 29.233 1.09e-79 283