Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01117 atggcatcttcattatcccatgtttcgaagtacgaggtgttcgtgagcttcagaggaggagaggctcgaaccggtttcttctcacaccttgcgaatgcgttctcaacgaatggaatcaacgctttcatcgatgagtatcttgaaaggggagatgatattatgtcatcacttgagggagcaatagaagggtctcagatagcccttgtcgtgttctctccaaactatgcttcatcaaggtggtgtcttgctgagctcgccaaaatcatggaatgtcgtagaatctacggtcagacagtggtgcccgtgttttacaacgttgatccagcggacgtacgtcatcaaacgggtgtgtttggagaaggcttacataactgtttaagatttgggagagtggcaaacgatatgttgaagatttgggagagtgcactcaaggaggctgcagatctgtctggttggcatgccgccaatgacaggaatgaagctgacttaatacaaaaaattgtggaggacattattgaaaaacttgatgtagagtcattgcctattacagaatttcctgttggattagagtctagagtgcaacaagtgattgagcttatcaatggtcaatcaagcgcaggttgtgttgtagggatatggggaatgggtggtttgggtaaaacaactattgccaaagccatctacaatcaaattcatgcaaaatacaaaggaagttttattgaaacaaataataaagggcttattgatttgcaagaaaaacttctttcagatgttctaagaacaaaggtcaagatacatagtgttacaatgggggtaactatgattcagagaagacttcatgaaaaaagggctctcgttatacttgatgatgtaacaaagtttgaacaattgaaagccttatgtggaaattgtaaatggattgatgaccaaggaagtgtaatcattgtcacaactagagatttacgcatgcttcatgaacttgaagattatcatgtagtacatatttgtagaataaaggaaatggacgaatatgagtcccttgagcttttcagcaagcatgcttttaaagaatcatatccaacgaaaaattggagtaaactctcaactgatgtagttgcttattgtggaggattaccactagctcttgaagtccttgggtcttacctacgtcggaggacaaaagaagaatggaaaagcgtactgtcaaaactaaagaatattcccaattatcaagttcatgaaaaattaagaataagctttgatggtttagatgatcacacagaaaaggaaatattccttgatatatgttgtttctttattggtaaaaacagagcctatgttacagagatactaaatggttgtggactatgtgctgatattggaataacagttctcatagagcgtagccttataaaagttgaaaagaaaaataaacttggaatgcatcctttgctacgagatatgggaagagagataatttgtgaaagttcacgaaacgaaccatggaagcgtagtcgattgtggtttcaaaaggaagttcttgatgtactcacaaataatactggaacagaagctattcagggaataactctaaacttgaatttcaccagcagagattgctttgaagctcacacctttaaagaaatgaagagattgaaactattgcaacttgatcatgtacaactcaccggagattatgggtatctatcaaagcaactgaaatggatatgttggcaagggtttcatttaaaaaccatccctaacaactttgatctgaaaggtgtaattgccattgatttaaaacacagtaatcttatactagtatggaaaaaaacccaggttttgcagcagctaaaaatcctcaatcttagtcattccaagttcttgtctgaaactcctgacttttcaggactaccaagtcttgaaaaactcattctcaaagattgtccaagtttgcacaaggtacaccaatccattggaacactacacaaattgttattgataaatttgaaggactgtacaagcctaaagaacctcccgcgggagacatacaagttgaaatctgtgaaaactctcatcctatctggttgtaagaatattgacaaaatagaagaggatatagtgcaaatgaaatccttgacaactcttgttgcagataatactgctgtgaaacaagtgcccttttccattgtaacttcaaaaagcattggatacatatccctatgtggatttgaaggattatcacgtaatgtttttccttcaatcatttggtcgtggatgtcaccaacaatgagtcccctatcttatattcgtccgtttggtggcgtatcatcatctatagtttccatggatgtgaagaataataatttgggtgatctagaactaatgcttagcagcctttcaaaccttcgaagtgttttggtgcagtgtgacacatattttgagctatcaaaacaattaagaacaattttggatgatgtatatggtgcaaatttttctgatatagaaataacatcatatagatcacaaagttcaaatgattccttaaggtcttatttgattggattgggaagttaccaggaagtcttcaatactcttagcaggatcatatctgagggattggcagctggtgagtcttgtgatgtttttcagccaactgacaataatcctttttggttggcctttatgggcgagggacattcagtgtatttcactgtgcctgaagattgtcgcatgaagggaatgattttatgtgttgtttattcatcaactcctgaaaacatggcaactgaattccttattagtgtcttaatggttaattacacaaagtgcacaatccagatatacaagcaagacacagtaatttcctttggtaattcagattgggagggcataatttctcattttggatctggagacaaggtggaaatttttttgacttttggacatggattggttgtgaagaagacatgtgtctatctaatctatgataaatcaattgacatagaaatagatccttctcttgaaccaattaacgagcttcagaaagagcgaactaatgagactgagaaagagagccttctccaatatgataaatcaattgatgtgggaatagagccttctcctgagccaatcaatgagcccgagcaagagacaattaaagaattagagaaagagccaccaaaagaaccaaagaaaaggtcttatgggtgtggtgtgatgcatagaaccatagtagattaa 3243 0.0 MASSLSHVSKYEVFVSFRGGEARTGFFSHLANAFSTNGINAFIDEYLERGDDIMSSLEGAIEGSQIALVVFSPNYASSRWCLAELAKIMECRRIYGQTVVPVFYNVDPADVRHQTGVFGEGLHNCLRFGRVANDMLKIWESALKEAADLSGWHAANDRNEADLIQKIVEDIIEKLDVESLPITEFPVGLESRVQQVIELINGQSSAGCVVGIWGMGGLGKTTIAKAIYNQIHAKYKGSFIETNNKGLIDLQEKLLSDVLRTKVKIHSVTMGVTMIQRRLHEKRALVILDDVTKFEQLKALCGNCKWIDDQGSVIIVTTRDLRMLHELEDYHVVHICRIKEMDEYESLELFSKHAFKESYPTKNWSKLSTDVVAYCGGLPLALEVLGSYLRRRTKEEWKSVLSKLKNIPNYQVHEKLRISFDGLDDHTEKEIFLDICCFFIGKNRAYVTEILNGCGLCADIGITVLIERSLIKVEKKNKLGMHPLLRDMGREIICESSRNEPWKRSRLWFQKEVLDVLTNNTGTEAIQGITLNLNFTSRDCFEAHTFKEMKRLKLLQLDHVQLTGDYGYLSKQLKWICWQGFHLKTIPNNFDLKGVIAIDLKHSNLILVWKKTQVLQQLKILNLSHSKFLSETPDFSGLPSLEKLILKDCPSLHKVHQSIGTLHKLLLINLKDCTSLKNLPRETYKLKSVKTLILSGCKNIDKIEEDIVQMKSLTTLVADNTAVKQVPFSIVTSKSIGYISLCGFEGLSRNVFPSIIWSWMSPTMSPLSYIRPFGGVSSSIVSMDVKNNNLGDLELMLSSLSNLRSVLVQCDTYFELSKQLRTILDDVYGANFSDIEITSYRSQSSNDSLRSYLIGLGSYQEVFNTLSRIISEGLAAGESCDVFQPTDNNPFWLAFMGEGHSVYFTVPEDCRMKGMILCVVYSSTPENMATEFLISVLMVNYTKCTIQIYKQDTVISFGNSDWEGIISHFGSGDKVEIFLTFGHGLVVKKTCVYLIYDKSIDIEIDPSLEPINELQKERTNETEKESLLQYDKSIDVGIEPSPEPINEPEQETIKELEKEPPKEPKKRSYGCGVMHRTIVD 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01117 1080 Gene3D - 5 182 IPR035897 -
Pste6g01117 1080 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 177 - -
Pste6g01117 1080 MobiDBLite consensus disorder prediction 1048 1070 - -
Pste6g01117 1080 SUPERFAMILY L domain-like 481 807 - -
Pste6g01117 1080 Gene3D - 340 424 IPR042197 -
Pste6g01117 1080 MobiDBLite consensus disorder prediction 1036 1080 - -
Pste6g01117 1080 ProSiteProfiles TIR domain profile. 9 175 IPR000157 GO:0007165
Pste6g01117 1080 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 152 IPR035897 -
Pste6g01117 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 435 IPR027417 -
Pste6g01117 1080 SMART till_3 10 149 IPR000157 GO:0007165
Pste6g01117 1080 Gene3D Ribonuclease Inhibitor 530 850 IPR032675 -
Pste6g01117 1080 FunFam Disease resistance protein (TIR-NBS-LRR class) 342 424 - -
Pste6g01117 1080 PRINTS Disease resistance protein signature 209 224 - -
Pste6g01117 1080 PRINTS Disease resistance protein signature 684 700 - -
Pste6g01117 1080 PRINTS Disease resistance protein signature 278 292 - -
Pste6g01117 1080 PRINTS Disease resistance protein signature 375 389 - -
Pste6g01117 1080 Pfam NB-ARC domain 190 406 IPR002182 GO:0043531
Pste6g01117 1080 Gene3D - 189 338 IPR027417 -
Pste6g01117 1080 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 725 IPR044974 GO:0006952
Pste6g01117 1080 Pfam TIR domain 10 176 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01117 Pste-Chr6 4641218 4650343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01117 5 730 WRKY Transcription Factor Family AT4G12020 28.780 1.54e-74 269