Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01113 atggaatccacgtcttcttcatcatccttctcagaagtgcatcagacaatttctaaagcggccatggaattttcttcctcagaactgcaaaagatgatttcaaattctttcaaggaatctgcgtcttcttcatcacccttctcgaaactgtatcggatgtacgatgtgttcatcaattttaggggaaacgacactcgagagaagtttgtttctcatctccattatgccctctcaaaagctggactcaaaactttccttgatgacgagaatctacaaagaggaaaggagctgcatcttgaactaatgaaagcaatagcaaggtctaagatatacttggttgttttctccaaaagctatactgaatctagttggtgtcttgatgagcttgaacaaatcatcagattcgagaaactttataggaaagagaccacagttgtgcccatattttatgatgttgacccatccgttgtacgtcatcagactaaagattttggaaaagctttggagggaactgttgagaaaagatattccggagaagatgcaaaaatcaagttgatcaggtggagccatgctgtcaaaaaaagctgcaaatttctctggagtgaatctgagctagtggagaaaattgttgaagacattctcacagaactagactatgatggagacttgtttattaccaaatttcctgttggattagattgccgtatcgaaaaagttattaggttagttgacaatcaatccaccaaagtatgtatgatagggatatggggaatgggaggaatgggtaagactaccactgcaaaagccatctacaaccaactttatcataaattcagggaaagaagtttcattgaagatattagacaaatttatcaaacagatagaataggacatactcttttacaaaaaaggcttctttcagatgttctaaagaaagaggtcaaggtacttagcatcgggatgggaaaaactatgatcaaggaaagactttctggaaaaagcatgctcattgtacttgatgatgtgaatgagtttggccaattagaagacctatgtggaaatcgtgagtggtttggtcctagaactgtaataatcattactactagagatgtacacctactaaagcaacttgaagttgattacgtttataaaatggaggaaatggacgaaaatgagtcccttgagctttttagctggcatgcttttggacagtcagaaccaaaagaagacttcaaagaacttgcaagaaatgtagttgcttattgtggaggactaccactagctcttcgagtccttggttcttatttaattgggaggcaaaaacagttatggaatagtgtgttgtcaaaactggaaaaaattcccaataatcaagttcaaaagatattaagaataagctttgatggtttaagtgatcctatggaaaaagatatattccttgatatatgttgtttctttattggaaaagacagaggctatgttacagatatactaaatggttgtggactgtgtgctgatattggaataactgttctcatacaacgtagtctcataacaattgaaaagaaaaacaaaattggaatgcatcatttgctacgagacatgggaagagagataatttgtgaaagttcaggaaatgaaccatggaagcgtagtcgattgtggtttcaagaggatgttcttgatgtactaacaaatagtaatgttttgccatggctaaaaatcctgaatcttagtcatttcaagttcttgcctgaaacccctgacttttcagcactaccaaatcttgaaaaactcgtcctcaaagattgtccaattttgcacaaggtgcaccaatccattggaagtctccacaatctgttattgataaatttgaaagattgtacaagcctaaacaacctaccgagggagacatacaaattgaaatcagtgaaaactctcatcctatctggttgtacaaatattgataaattagaagaggatatagtgcagatggaatgcttgacaactcttgctgcagataatactgctgtgaaacaagtccccttttccattgtaaattcaaaaagcattggatacatatccctatgtggatttgaaggattatcacgtaatgtttttccttga 2127 0.0 MESTSSSSSFSEVHQTISKAAMEFSSSELQKMISNSFKESASSSSPFSKLYRMYDVFINFRGNDTREKFVSHLHYALSKAGLKTFLDDENLQRGKELHLELMKAIARSKIYLVVFSKSYTESSWCLDELEQIIRFEKLYRKETTVVPIFYDVDPSVVRHQTKDFGKALEGTVEKRYSGEDAKIKLIRWSHAVKKSCKFLWSESELVEKIVEDILTELDYDGDLFITKFPVGLDCRIEKVIRLVDNQSTKVCMIGIWGMGGMGKTTTAKAIYNQLYHKFRERSFIEDIRQIYQTDRIGHTLLQKRLLSDVLKKEVKVLSIGMGKTMIKERLSGKSMLIVLDDVNEFGQLEDLCGNREWFGPRTVIIITTRDVHLLKQLEVDYVYKMEEMDENESLELFSWHAFGQSEPKEDFKELARNVVAYCGGLPLALRVLGSYLIGRQKQLWNSVLSKLEKIPNNQVQKILRISFDGLSDPMEKDIFLDICCFFIGKDRGYVTDILNGCGLCADIGITVLIQRSLITIEKKNKIGMHHLLRDMGREIICESSGNEPWKRSRLWFQEDVLDVLTNSNVLPWLKILNLSHFKFLPETPDFSALPNLEKLVLKDCPILHKVHQSIGSLHNLLLINLKDCTSLNNLPRETYKLKSVKTLILSGCTNIDKLEEDIVQMECLTTLAADNTAVKQVPFSIVNSKSIGYISLCGFEGLSRNVFP 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01113 708 ProSiteProfiles TIR domain profile. 52 217 IPR000157 GO:0007165
Pste6g01113 708 Gene3D - 48 222 IPR035897 -
Pste6g01113 708 Gene3D - 225 383 IPR027417 -
Pste6g01113 708 Pfam TIR domain 54 216 IPR000157 GO:0007165
Pste6g01113 708 SMART till_3 53 193 IPR000157 GO:0007165
Pste6g01113 708 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 54 564 IPR044974 GO:0006952
Pste6g01113 708 SUPERFAMILY "Winged helix" DNA-binding domain 458 564 IPR036390 -
Pste6g01113 708 PRINTS Disease resistance protein signature 252 267 - -
Pste6g01113 708 PRINTS Disease resistance protein signature 329 343 - -
Pste6g01113 708 PRINTS Disease resistance protein signature 639 655 - -
Pste6g01113 708 PRINTS Disease resistance protein signature 422 436 - -
Pste6g01113 708 Pfam NB-ARC domain 236 463 IPR002182 GO:0043531
Pste6g01113 708 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 482 IPR027417 -
Pste6g01113 708 Gene3D Ribonuclease Inhibitor 556 706 IPR032675 -
Pste6g01113 708 SUPERFAMILY Toll/Interleukin receptor TIR domain 44 179 IPR035897 -
Pste6g01113 708 FunFam Disease resistance protein (TIR-NBS-LRR class) 389 471 - -
Pste6g01113 708 SUPERFAMILY RNI-like 556 704 - -
Pste6g01113 708 Gene3D - 387 471 IPR042197 -
Pste6g01113 708 FunFam Disease resistance protein (TIR-NBS-LRR class) 51 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01113 Pste-Chr6 4614207 4622463 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01113 230 555 WRKY Transcription Factor Family AT5G45050 34.251 3.46e-57 209