Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01112 TTTGAAGATACTCCTCTCTTCATCTATAAATAACTCCCTGGCTTCCTCACAAGCTATAACTATAACTACAACTACAAGGAAGGGTCTCATATAGAGCTAGGTACGTACAACGTAGTATTAATTAAGAACAAGTTTGAAAGATCGATGTTTGACAGAAGCAACAAGATCAAGGGCACTGTGGTGTTGATGCCCAAGAACGTGTTGGACGTCAACGCCGTTAATTCGGTCACAAATGGTGGTTTGGTGTCCGGTATCTTTGACGTCGTCTCCGACGTAGCAGGTCAAATAGTTGATACTGCAACTTCCATCTTAGCCCGCAACGTCTCCTTCAAGTTGATCAGTGCTACCTCCACTGATGCAAGGGGATATGGGAAAGTTGGTAAGGAAACCTTTTTGGAGAAGCATCTTCCAACGTTACCAACCTTTGGAGACAGGAGGGATGCATTCGATATTCATTTTGAATGGGATGCCAACTTCGGAATTCCAGGAGCATTTTACATCAGAAACTTTATGAATGATGAGTTCTTCCTTGTCAGTCTCACTCTTGAGGACTTTCCAAATCACAGAACCATTCACTTTGTTTGTAACTCATGGGTCTACAACTTCAGAAACTACAAAAAGGATCGCATTTTCTTTACCAATAATACATATCTTCCAAGTGCAACACCAGCTCCATTGGTTAAGTACAGGGAAGATGAGTTGGTGGTTTTAAGAGGAGATGGAACGGGACAACGCAAAGAATGGGAAAGAATTTATGATTATGATGTCTATAATGATTTGGGCAACCCAGATAGTGATAAAAAGCTTGCTCGCCCAGTCCTTGGAGGCTCCTCCACCTATCCATACCCTCGTAGGGTTAGAACTGGTAGAAAAGCCACCAACAAAGATCCTAAGAGCGAGAGACCTTCAGGAGAAGTTTATTTGCCAAGAGATGAAAAGTTCGGTCACTTGAAGTCATCAGATTTCCTCACTTATGGAATAAAATCCTTATCTCAAAAATTTTTACCTTTGCTAGAATCGGTCTTTTTTGACTCAGATTTCACACCAAATGAGTTTGATAGTTTTGAAGAAGTGCGAGACCTGTATGAAGGTGGAATTAAGGTTCCAACAAATGTACTTAGCAAAATTAGTCCCTTACCAGTCCTCAAAGAAATCTTCCGCACTGACGGTGAAAGTGTCCTTCAGTTTCCACCACCACATGTAGTCAAAGTTAGTAAGTCAGCGTGGATGACTGATGAAGAATTTGCAAGAGAGATGATTGCCGGTGTAAACCCTTGTGTAATTCGTCGTCTTCAAGAGTTCCCACCACAAAGCAAGCTAGATCCCACTCTCTATGGCGATCAAACTAGCACCATAACAAAAGAAAAGTTGGAGATTAACATGAGTGGGGTCACAGTCGAAGAGGCACTTAATGGTAAGAGATTATTCATATTAGATTATCAAGATGCATTCATGCCATATTTGACAAGGATACACAGCCTAGAATCTGCAAAAGCATATGCCACTAGGACCATTCTGTTCTTGAAAGATGATGGGACTTTGAAGCCACTTGCTATTGAATTAAGCAAGACACATCCAGATGGAGATAATTTGGGTGCTGTGAGTAAAGTGGTGTTGCCTGCAACAGAAGGCATTGACAGTACAATTTGGCTATTGGCCAAGGCTCATGTTATTGTAAATGACTCATGCTATCATCAGCTCATGAGCCACTGGTTAAATACTCATGCAGTAACAGAGCCATTCATCATAGCCACAAACAGGCATCTCAGCGTGCTTCACCCCATTTATAAACTTCTTCAACCTCACTATCGTGACACCATAAATATCAATGGACTTGCTAGGCAATCCTTGATTAATGCAGGTGGCGTCATAGAGCAATCATTTTTGCCTGGACCGTTTTCTATTGAGATGTCTTCAGTTGTTTACAAAAATTGGGTTTTCCCTGACCAAGCTTTACCGGCCGATCTCATCAAGAGAGGATTAGCAGTTGAGGATCCCTCTGCTCCTCACGGTCTTCGTCTTGTGATAGAAGACTACCCTTATGCTGTTGATGGATTAGAAATATGGGATGCTATCAAGACATGGGTCAAAGAGTATGTTTCCTTGTATTATCCAACAGATGCAGCAGTTGAACAAGATACTGAAATACAAGAATGGTGGAAGGAAGCTGTGGAGAAGGGACATGCAGACTTAAAAGATAAGCCTTGGTGGCCTAAAATGCAAAGTCTTGAAGAGCTTATTCAATCCTGCTCCACTATTATATGGACAGCTTCGGCTCTCCATGCAGCTGTTAATTTTGGACAATATCCTTATGGAGGATATATCCTGAACCGTCCAACTCTTAGCAGAAGATGGATTCCAGAACCGGGAACCATAGAGTATGATGAGATGGTGAAGAGTCCTCAGAAGGCTTATTTGAGAACCATTACACCAAAGTACCAGACCATTATTGATCTTACAGTGATAGAGATACTGTCAAGGCATGCTTCTGATGAGGTGTACCTTGGGCAGAGGGAGAATCCAAATTGGACATCTGATTCAAAGGCATTAGAAGCATTCAAAAAGTTTGGAAGCAAGCTGGCAGAAATTGAGGGGAAAATCACAGGAAGGAACAACAACTCAAATATGAAAAATAGGTTTGGACCAGTTCAACTGCCATACACATTGCTTATTCCTTCAAGTGAGGAAGGATTGACTTTAAGGGGAATTCCTAACAGTATCTCTATTTAAGGAGTGTGTGGTTTGGTTACCTTATGGATCCATCTACTGTCTAATAACATCAATGATAAAATGATTTGTCTATGTATCTGCAATTAATTTTGTGTTTAATTATCCTCGTACTACCGTATTTAGAATTGGATGCTCTTATTTGGAGAAAATAACAGTTTTTATCTGCACTTAATTTGTATTTCGTTCGTGTTGCGCTTACCAATCTATAGTACATGTAAAGACTACAGTGTACAGACTAATAAATTTATTAATAGAACTGTTCTTTTCTTTTC 3002 0.4057 MFDRSNKIKGTVVLMPKNVLDVNAVNSVTNGGLVSGIFDVVSDVAGQIVDTATSILARNVSFKLISATSTDARGYGKVGKETFLEKHLPTLPTFGDRRDAFDIHFEWDANFGIPGAFYIRNFMNDEFFLVSLTLEDFPNHRTIHFVCNSWVYNFRNYKKDRIFFTNNTYLPSATPAPLVKYREDELVVLRGDGTGQRKEWERIYDYDVYNDLGNPDSDKKLARPVLGGSSTYPYPRRVRTGRKATNKDPKSERPSGEVYLPRDEKFGHLKSSDFLTYGIKSLSQKFLPLLESVFFDSDFTPNEFDSFEEVRDLYEGGIKVPTNVLSKISPLPVLKEIFRTDGESVLQFPPPHVVKVSKSAWMTDEEFAREMIAGVNPCVIRRLQEFPPQSKLDPTLYGDQTSTITKEKLEINMSGVTVEEALNGKRLFILDYQDAFMPYLTRIHSLESAKAYATRTILFLKDDGTLKPLAIELSKTHPDGDNLGAVSKVVLPATEGIDSTIWLLAKAHVIVNDSCYHQLMSHWLNTHAVTEPFIIATNRHLSVLHPIYKLLQPHYRDTININGLARQSLINAGGVIEQSFLPGPFSIEMSSVVYKNWVFPDQALPADLIKRGLAVEDPSAPHGLRLVIEDYPYAVDGLEIWDAIKTWVKEYVSLYYPTDAAVEQDTEIQEWWKEAVEKGHADLKDKPWWPKMQSLEELIQSCSTIIWTASALHAAVNFGQYPYGGYILNRPTLSRRWIPEPGTIEYDEMVKSPQKAYLRTITPKYQTIIDLTVIEILSRHASDEVYLGQRENPNWTSDSKALEAFKKFGSKLAEIEGKITGRNNNSNMKNRFGPVQLPYTLLIPSSEEGLTLRGIPNSISI 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01112 861 Gene3D - 495 860 - -
Pste6g01112 861 MobiDBLite consensus disorder prediction 219 258 - -
Pste6g01112 861 Gene3D - 170 269 - -
Pste6g01112 861 CDD PLAT_LH2 7 166 IPR042057 -
Pste6g01112 861 Gene3D - 359 494 - -
Pste6g01112 861 Gene3D PLAT/LH2 domain 1 169 - -
Pste6g01112 861 PRINTS Plant lipoxygenase signature 385 404 IPR001246 GO:0016491
Pste6g01112 861 PRINTS Plant lipoxygenase signature 301 322 IPR001246 GO:0016491
Pste6g01112 861 PRINTS Plant lipoxygenase signature 346 362 IPR001246 GO:0016491
Pste6g01112 861 PRINTS Plant lipoxygenase signature 774 788 IPR001246 GO:0016491
Pste6g01112 861 PRINTS Plant lipoxygenase signature 233 252 IPR001246 GO:0016491
Pste6g01112 861 PRINTS Plant lipoxygenase signature 161 182 IPR001246 GO:0016491
Pste6g01112 861 PRINTS Plant lipoxygenase signature 135 153 IPR001246 GO:0016491
Pste6g01112 861 PRINTS Plant lipoxygenase signature 200 216 IPR001246 GO:0016491
Pste6g01112 861 PRINTS Plant lipoxygenase signature 452 476 IPR001246 GO:0016491
Pste6g01112 861 FunFam Lipoxygenase 360 494 - -
Pste6g01112 861 Pfam Lipoxygenase 178 844 IPR013819 GO:0016702|GO:0046872
Pste6g01112 861 ProSiteProfiles PLAT domain profile. 36 165 IPR001024 GO:0005515
Pste6g01112 861 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 6 169 IPR036392 GO:0005515
Pste6g01112 861 Pfam PLAT/LH2 domain 68 164 IPR001024 GO:0005515
Pste6g01112 861 ProSitePatterns Lipoxygenases iron-binding region signature 2. 544 554 IPR020834 GO:0016702|GO:0046872
Pste6g01112 861 PRINTS Lipoxygenase signature 537 557 IPR013819 GO:0016702|GO:0046872
Pste6g01112 861 PRINTS Lipoxygenase signature 517 534 IPR013819 GO:0016702|GO:0046872
Pste6g01112 861 PRINTS Lipoxygenase signature 499 516 IPR013819 GO:0016702|GO:0046872
Pste6g01112 861 SUPERFAMILY Lipoxigenase 170 861 IPR036226 -
Pste6g01112 861 MobiDBLite consensus disorder prediction 241 258 - -
Pste6g01112 861 FunFam Lipoxygenase 170 269 - -
Pste6g01112 861 Gene3D - 270 358 IPR027433 -
Pste6g01112 861 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 168 861 IPR013819 GO:0016702|GO:0046872
Pste6g01112 861 FunFam Lipoxygenase 496 860 - -
Pste6g01112 861 PANTHER LIPOXYGENASE 6 861 IPR000907 GO:0016702|GO:0034440|GO:0046872
Pste6g01112 861 ProSitePatterns Lipoxygenases iron-binding region signature 1. 517 531 IPR020833 GO:0016702|GO:0046872
Pste6g01112 861 SMART LH2_4 6 166 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01112 Pste-Chr6 4609179 4614925 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01112 5 861 Acyl Lipid Metabolism Gene Families AT1G55020 56.157 0.0 1000