Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01104 GAGACAGTGTGGCAGAAAGAATAGTAGAAGAGAAAAAAGAAGTTGATAGAGAAAAACTAGTGTAGGAGAGATATAAAAAAGTAGGGATGGTGGAATAATTTGAAAGGAGAGAGGAAGGTCATGTTTTTCACATGGTTGGCTTTGAAGATGATGATGTTGAGAGTATGTATGAGCTTATAAATAGCATTAGCTAGCGAGGCATGTTGGTAAGAAGGCAGAAAAGAACTTAGAAGAAGTGCAGCAAAGATGTTTTCAGGTGTGACCGGTTTGATAAACAGGGGCCAGAAGCTGAAGGGAACTGTGGTGTTGATGCGTAAGAATGTGTTGGACATCAACGCCCTCACCTCCGCTCAAAGTGCCACCGGCATCATCGGCGGCGCCTTCAACGTCGCCTCCGATCTCTTTGGCACCGGTCTTGACACCCTCACTTCCTTTCTCGGCCGCTCTGTCGCTCTCAAGTTGATCAGTGCCACCGTTCCTGACTCATCTGGAAAGGGAAAGGTGGGAAAGCAAACTTTTCTGGAAGGTCTTGTTGCTTCCCTACCAACCTTGGGAGCTGGCCAATCTGCATTTGATATTCATTTCGAATGGGACAGTAGCATGGGAATTCCTGGAGCTTTTTACATCGACAATTTTATGCAAGTTGAATTCTTTCTTGTGAGTTTGACTCTTGAAGACGTTCCTAACCATGGAACCATCCACTTTGTTTGCAACTCGTGGGTTTACAACTCAACAATGTACAAAACTACTCGCATTTTCTTTGCCAACAAGACATATCTTCCTAGTGAAACACCGGGTCCACTAGTGAAGTACAGAGAAGATGAATTGAAGGTTTTAAGAGGAGATGGAACAGGAGAGCGCAAAGAACATGAAAGGATCTATGATTATGATGTCTACAATGATTTGGGTGATCCTGACTCCAATGACAGATTGGCTCGCCCAGTTCTTGGAGGCGCTACCTTGCCATATCCTCGCAGGGGAAGGACCGGAAGAAAGCCAACTAGAAAAGATCCTAAGAGTGAGAGCCGCAGCGACTCTGTTTACCTTCCAAGGGATGAATCATTTGGTCACTTGAAGTCGTCAGATTTCCTTGTCTATATACTTAAGTCTGCATCTCAGAATGTGATACCTCAATTACAATCCTTTTCGGACTAG 1155 0.445 MFSGVTGLINRGQKLKGTVVLMRKNVLDINALTSAQSATGIIGGAFNVASDLFGTGLDTLTSFLGRSVALKLISATVPDSSGKGKVGKQTFLEGLVASLPTLGAGQSAFDIHFEWDSSMGIPGAFYIDNFMQVEFFLVSLTLEDVPNHGTIHFVCNSWVYNSTMYKTTRIFFANKTYLPSETPGPLVKYREDELKVLRGDGTGERKEHERIYDYDVYNDLGDPDSNDRLARPVLGGATLPYPRRGRTGRKPTRKDPKSESRSDSVYLPRDESFGHLKSSDFLVYILKSASQNVIPQLQSFSD 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01104 302 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 176 302 IPR013819 GO:0016702|GO:0046872
Pste6g01104 302 PRINTS Plant lipoxygenase signature 208 224 IPR001246 GO:0016491
Pste6g01104 302 PRINTS Plant lipoxygenase signature 240 259 IPR001246 GO:0016491
Pste6g01104 302 PRINTS Plant lipoxygenase signature 169 190 IPR001246 GO:0016491
Pste6g01104 302 PRINTS Plant lipoxygenase signature 143 161 IPR001246 GO:0016491
Pste6g01104 302 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 13 177 IPR036392 GO:0005515
Pste6g01104 302 PANTHER LIPOXYGENASE 12 299 IPR000907 GO:0016702|GO:0034440|GO:0046872
Pste6g01104 302 SUPERFAMILY Lipoxigenase 178 300 IPR036226 -
Pste6g01104 302 Gene3D PLAT/LH2 domain 4 177 - -
Pste6g01104 302 ProSiteProfiles PLAT domain profile. 44 173 IPR001024 GO:0005515
Pste6g01104 302 SMART LH2_4 13 174 IPR001024 GO:0005515
Pste6g01104 302 Pfam Lipoxygenase 186 300 IPR013819 GO:0016702|GO:0046872
Pste6g01104 302 FunFam Lipoxygenase 178 276 - -
Pste6g01104 302 Pfam PLAT/LH2 domain 80 172 IPR001024 GO:0005515
Pste6g01104 302 MobiDBLite consensus disorder prediction 252 271 - -
Pste6g01104 302 Gene3D - 178 276 - -
Pste6g01104 302 MobiDBLite consensus disorder prediction 223 271 - -
Pste6g01104 302 CDD PLAT_LH2 14 174 IPR042057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01104 Pste-Chr6 4541235 4543540 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01104 1 302 Acyl Lipid Metabolism Gene Families AT1G55020 49.684 8.04e-94 294