Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01098 TTTGATTAAGAAGGTGATTTGATTTGTGTGTTGGGAAAGATGTTTTCAGGTATTACGGATCTGTTAGACGGAGGGGATGAGAAGCTGAAGGGAACTGTGGTGTTGATGCGTAAGAATGTGTTGGACATCAACGCCCTCACCTCCGCTCAAAGTGCCACCGGCATCATCGGCGGCACCTTCGACGTCGTCACCGATCTCGTTGCCACCGGAGTTGACACTCTCACCTCCTTTCTTGGCAGATCAGTGGCTCTCAACTTGATCAGTGCCACTTCTGCTGACTCATCTGGAAAGGGAAAGGTGGGAAAGCAAAGTTTTCTGGAAGGTATTGTGGTTTCCTTACCAACCTTGGGAGAAGGCGAGTCTGCATTTGATATTCATTTTGAATGGAACAGTGATATGGGAATTCCTGGAGCATTTTATATTGAAAATTTTATGCAAGTTGAATTCTTCCTTGTGAGTTTGACTCTTGAAGACGTTCCTAACCATGGAACCATCCATTTTGTTTGCAACTCATGGGTTTACAACTCTACAATGTACCAAACTAGTCGCATTTTCTTTGCCAACAAGACATATCTTCCAAGTGAAACGCCTGGTCCACTGGTGAAGTACAGAGAAGATGAATTGAAGGTTTTAAGAGGAGATGGAACAGGAGAGCGCGAAGAACATGAAAGAATCTATGACTATGATGTATACAATGATTTGGGTGACCCTGACTCGGATGACACATTGGCTCGCCCAGTTCTTGGAGGATCCACCACCTTGCCTTATCCTCGTAGGGGAAGAACGGGAAGAGAACGAACAACTCAAGATCCTAAGAGTGAGAGCCGCAGCGACTCTGTTTACCTTCCAAGGGATGAATCATTTGGTCACTTGAAGTCGTCAGATTTCCTTGTCTATATACTTAAGTCTGCATCTCAGAATGTGATACCTCAATTACAATCCGCACTCAGACTAGAATTCAATGACCCAGAGTTTACTAGCTTTGAAGACGTGCGTGGACTCTATGATGGTGGAATTAAGTTGCCCATCGATATACTTAGCGATCTTAGTCCTATACCATTGTTCGTTGAACTATTCCGAATCGATGGGGAACAAGTGCTTAAGTTTCCACCACCTAAAGTAATTCAAGTTGAATCAATCCGATGGATGAATGATGAAGAATTTGCAAGAGAGATGATTGCCTTGTTCATTAAATTTGCAGGTCATAACCTTACTTCCATGAAAATTAAATTTATTGCGGAGTTCCCACCAAAGAGCAAGCTAGATAGCCAAATCTACGGTGATAACACCTGTACAATCACCGAGAGAACACTTGAGCCAAATTTGGATATTTTATTTTCTTTTTTGAACGTACAGGCCATCCAAAACAACAAATTGTTCATACTAGACCACCACGACACACTCATTCCATATTTGAGGCGGATAAACGCAACTGCGACAAAGGCATATGCTACTAGAACCATCCTTTTCTTGCAAGATAACGGAACCTTAAAACCGTTGGCCATTGAGCTAAGTAAACCACATCCTCGTGGTGATAATTATGGTCCTATTAGTAACGCTCATCTTCCAAATGAACAAGGCATTGAAGCTTCCATTTGGCTACTTGCTAAGGCTTATGTCATCGTAAATGACTCTTGCTATCACCAAATTGTCACCACTGGTACAAATTTTTCAAACAAGATTTATACATTCAAACTTAACTGCCTCATGAATTATTCATCCTTTAATATTATCTTACATGCGACAGTTGTTGAGCCATTTGTCATAGCAACAAACAGGCATCTTAGTGTTGTTCACCCTATTCACAAACTTCTTCTTCCACACTACCGTGACACCATGAACATCAATGCACTTGCAAGGAATGTCCTGGTCAATGCTGAAGGTATTATCGAATCAACATTCTTGTGGGGACGCTATTCTTTGGAAATGTCTGCTGTTGTATATAAGGATTGGGTTTTTCCTGAGCAAGCACTACCTGCCGATCTTGTTAAAAGAGGCGTGGCTGTTGAGGATTCTTCTTCTCCACATGGCCTCCGTCTTTTGATTGAGGACTATCCTTATGCTGCTGATGGACTAGAAATTTGGGGTGTGATCAAGTCATGGGTGCAAGAATATGTGTTTTTCTACTATAAGTCAGACGGTGCTGTTGCACAAGATACTGAACTCCAAGCCTTTTGGAAAGAAGTTGTAGAGGTTGGTCATGGTGACAAGAAAAATGAGACATGGTGGGTAAAGATGCAAACTCGCCAAGAGTTGATTGAGTCATGCACCACCCTCATATGGACTGCTTCAGCCCTTCATGCAGCTGTTAATTTTGGGCAATATCCTTATGGTGGTTACATCCTTAACCGACCAACTCTTAGTAGGGGTTTCATGCCTGAGATAGGGTCACCTGAGTATGATGAGCTTGCCAAGAGCCCTCAGAAGGTGTATCTGAAAACAATTACAGGGAAGACTGAAGCCCTTAAAGACCTTACAATCATAGAGGTCTTGTCAAGGCATGCTTCTGACGAGTTGTACCTTGGACAGAGAGATGGTGGTGAATTTTGGACTTATGAAAAAGAGCCATTAGAGGCCTTCAAGAGTTTTGGCAAAAAGCTGGCAGAAATTGAGCAAAAACTCATCCAAAGGAACAATGATGAGACTCTGAGGAACCGATATGGCCCTGTGAAGATGCCCTACACATTGCTTTATCCTTCCAAA 2703 0.4251 MFSGITDLLDGGDEKLKGTVVLMRKNVLDINALTSAQSATGIIGGTFDVVTDLVATGVDTLTSFLGRSVALNLISATSADSSGKGKVGKQSFLEGIVVSLPTLGEGESAFDIHFEWNSDMGIPGAFYIENFMQVEFFLVSLTLEDVPNHGTIHFVCNSWVYNSTMYQTSRIFFANKTYLPSETPGPLVKYREDELKVLRGDGTGEREEHERIYDYDVYNDLGDPDSDDTLARPVLGGSTTLPYPRRGRTGRERTTQDPKSESRSDSVYLPRDESFGHLKSSDFLVYILKSASQNVIPQLQSALRLEFNDPEFTSFEDVRGLYDGGIKLPIDILSDLSPIPLFVELFRIDGEQVLKFPPPKVIQVESIRWMNDEEFAREMIALFIKFAGHNLTSMKIKFIAEFPPKSKLDSQIYGDNTCTITERTLEPNLDILFSFLNVQAIQNNKLFILDHHDTLIPYLRRINATATKAYATRTILFLQDNGTLKPLAIELSKPHPRGDNYGPISNAHLPNEQGIEASIWLLAKAYVIVNDSCYHQIVTTGTNFSNKIYTFKLNCLMNYSSFNIILHATVVEPFVIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGIIESTFLWGRYSLEMSAVVYKDWVFPEQALPADLVKRGVAVEDSSSPHGLRLLIEDYPYAADGLEIWGVIKSWVQEYVFFYYKSDGAVAQDTELQAFWKEVVEVGHGDKKNETWWVKMQTRQELIESCTTLIWTASALHAAVNFGQYPYGGYILNRPTLSRGFMPEIGSPEYDELAKSPQKVYLKTITGKTEALKDLTIIEVLSRHASDELYLGQRDGGEFWTYEKEPLEAFKSFGKKLAEIEQKLIQRNNDETLRNRYGPVKMPYTLLYPSK 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01098 888 Gene3D - 513 888 - -
Pste6g01098 888 Gene3D PLAT/LH2 domain 8 178 - -
Pste6g01098 888 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 177 888 IPR013819 GO:0016702|GO:0046872
Pste6g01098 888 SUPERFAMILY Lipoxigenase 179 887 IPR036226 -
Pste6g01098 888 PRINTS Lipoxygenase signature 578 598 IPR013819 GO:0016702|GO:0046872
Pste6g01098 888 PRINTS Lipoxygenase signature 517 534 IPR013819 GO:0016702|GO:0046872
Pste6g01098 888 Gene3D - 367 511 - -
Pste6g01098 888 Pfam Lipoxygenase 187 539 IPR013819 GO:0016702|GO:0046872
Pste6g01098 888 Pfam Lipoxygenase 567 886 IPR013819 GO:0016702|GO:0046872
Pste6g01098 888 MobiDBLite consensus disorder prediction 246 268 - -
Pste6g01098 888 Pfam PLAT/LH2 domain 81 173 IPR001024 GO:0005515
Pste6g01098 888 ProSiteProfiles PLAT domain profile. 48 174 IPR001024 GO:0005515
Pste6g01098 888 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 14 178 IPR036392 GO:0005515
Pste6g01098 888 CDD PLAT_LH2 15 175 IPR042057 -
Pste6g01098 888 Gene3D - 279 366 IPR027433 -
Pste6g01098 888 PANTHER LIPOXYGENASE 15 888 IPR000907 GO:0016702|GO:0034440|GO:0046872
Pste6g01098 888 Gene3D - 179 278 - -
Pste6g01098 888 FunFam Lipoxygenase 179 278 - -
Pste6g01098 888 ProSitePatterns Lipoxygenases iron-binding region signature 2. 585 595 IPR020834 GO:0016702|GO:0046872
Pste6g01098 888 PRINTS Plant lipoxygenase signature 144 162 IPR001246 GO:0016491
Pste6g01098 888 PRINTS Plant lipoxygenase signature 209 225 IPR001246 GO:0016491
Pste6g01098 888 PRINTS Plant lipoxygenase signature 815 829 IPR001246 GO:0016491
Pste6g01098 888 PRINTS Plant lipoxygenase signature 242 261 IPR001246 GO:0016491
Pste6g01098 888 PRINTS Plant lipoxygenase signature 309 330 IPR001246 GO:0016491
Pste6g01098 888 PRINTS Plant lipoxygenase signature 170 191 IPR001246 GO:0016491
Pste6g01098 888 PRINTS Plant lipoxygenase signature 470 494 IPR001246 GO:0016491
Pste6g01098 888 PRINTS Plant lipoxygenase signature 401 420 IPR001246 GO:0016491
Pste6g01098 888 FunFam Lipoxygenase 514 888 - -
Pste6g01098 888 SMART LH2_4 14 175 IPR001024 GO:0005515
Pste6g01098 888 MobiDBLite consensus disorder prediction 224 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01098 Pste-Chr6 4519095 4523841 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01098 1 887 Acyl Lipid Metabolism Gene Families AT1G55020 52.759 0.0 933