Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01091 AAATGTGTATATATAAAGAAAGAAGCGCGATTGAAACTGAAAGCAAAGCAACAAATAGGGATCAGTGAAGACAGAACAGAGTGAATGTGAATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGACGCACTCATCGCCGGCGTCGAAAAGCACGGCCCCGGAAAGTGGAAGAACATTCTCAAAGATCCTGAATTTGCCCCTTTTCTCACTTCCCGTTCCAACATCGATCTCAAGGATAAATGGCGAAATTTGAGCGTCAGCAACGGTTCTCAAGGCTCTAAAGACAAATCTAGGGTTCCCAAGCCCAAAGCTCTTCCTGCTCCTCCTACTGCCACCACCGCCACTCCTCAGAACGCTGCTCCTGCTCCTCAAAAAGCACAGTCCGATGCTACGGCCCCAGACTCTTCTCAGAATGACCAAGATGCCAAAAACCTTCCAAGGTATAACTCAATGGTCTTTGAAGCTCTATCAGCACTAAAGGATAGTAATGGATCTGACCTAAATGCCATTGTTAGTTTCATTGAGCAAAAACATCAGGTTCCTCAAAATTTTAGAAGGGCATTAAGTACAAGGTTGAGGAGGCTTGTTAGTCAAGGAAAACTTGAAAAGGTACAAAATTGTTACAAGATAAAAAAGGATGCCTCCTCGGGCACAAAATCACCTTCACCAAAACCAAAAGATATCCGGCTACCACAGCCACAACCACAACGGCAATCCCCAGCTTCTGTCTTTACGCCATCTAATGCAACCATAAAGGAAGCTGCAGATACTGTAGCCTACAGAGTTGCTGATGCTGAGAGTAAAACATATCTGGCTGCGGAAGCAGTAAAGGAGGCAGAAAAAATATCATTACTGGTTGAACATAGTGATTTCATGTTACAGCTAGCAAAAGAAATATATGAAAAATGTTCCCGTGGTGAAATTATCCTCTTGGCTTAAGATGGTTAAAGTAAGGTCTATAAATAGATTGTACTGATGTTGGTTTCTAAATGTAAAATTTTGTTGATACAATTAAATACTATTTTAACATTTTTTTGGGTGTATTTTATCAGATTCCTTTTAACATTTTTATTTCTTAAAATTGCATGGAAAGTCATGTTTATAGTAATATCATCTGTCCGCCAAATCTGTTCAGATGTTGGATCTAAAGTGTAAGCAATAGAAACTCATTTGTGTTTTTTTAGCCATGTAATATAAATCATTCTTGTGTCTTGGCTCTCCTCTTTGA 1234 0.4019 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPEFAPFLTSRSNIDLKDKWRNLSVSNGSQGSKDKSRVPKPKALPAPPTATTATPQNAAPAPQKAQSDATAPDSSQNDQDAKNLPRYNSMVFEALSALKDSNGSDLNAIVSFIEQKHQVPQNFRRALSTRLRRLVSQGKLEKVQNCYKIKKDASSGTKSPSPKPKDIRLPQPQPQRQSPASVFTPSNATIKEAADTVAYRVADAESKTYLAAEAVKEAEKISLLVEHSDFMLQLAKEIYEKCSRGEIILLA 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01091 284 Gene3D - 112 200 IPR036388 -
Pste6g01091 284 PANTHER SINGLE MYB HISTONE 4 1 283 IPR044597 GO:0003691
Pste6g01091 284 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Pste6g01091 284 SMART sant 4 59 IPR001005 -
Pste6g01091 284 Gene3D - 8 81 - -
Pste6g01091 284 SMART h15plus2 114 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pste6g01091 284 MobiDBLite consensus disorder prediction 52 117 - -
Pste6g01091 284 MobiDBLite consensus disorder prediction 52 67 - -
Pste6g01091 284 FunFam Telomere repeat-binding factor 1 2 58 - -
Pste6g01091 284 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pste6g01091 284 Pfam linker histone H1 and H5 family 118 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pste6g01091 284 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Pste6g01091 284 CDD H15 118 196 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pste6g01091 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Pste6g01091 284 SUPERFAMILY "Winged helix" DNA-binding domain 114 196 IPR036390 -
Pste6g01091 284 FunFam Telomere repeat-binding factor 1 112 193 - -
Pste6g01091 284 MobiDBLite consensus disorder prediction 182 215 - -
Pste6g01091 284 FunFam Telomere repeat-binding factor 1 8 87 - -
Pste6g01091 284 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Pste6g01091 284 CDD SANT_TRF 6 56 - -
Pste6g01091 284 MobiDBLite consensus disorder prediction 82 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01091 Pste-Chr6 4483845 4487600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01091 1 284 Single Myb Histone (SMH) Gene Family AT1G72740 50.174 1.29e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pste6g01091 Linker_histone 2.8e-12 CL0123