Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01083 ATGGATGAAAGCGCGAGGAGGGGTTTCTGTCCAGTAATGGAAGCTCGAATTGGAAACAAGTTCCGTCTCGGTCGGAAAATCGGTAGCGGATCTTTCGGGGAGATCTATCTTGGAACTAATGTTCAGACAAACGAAGAGGTTGCGATTAAGCTTGAAAATGTCAAAACCAAGCATCCTCAATTGTCATATGAATCGAAGCTTTATAAAATACTGCAAGGAGGAAATGGGATTCCCAATGTTAAATGGTATGGTGTTGAAGGAGAGTACAATGTGCTCGTGATGGATTTACTTGGCCCTAGTCTTGAGGATTTATTCAACTTCTGTAATCGGAAACTGTCTCTCAAAACTGTTCTTATGCTTGCTGATCAGATGTTAAATCGAGTTGAATTTGTTCACTCCAAATCATTTTTACACCGTGACATCAAGCCAGATAACTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAAGTGTATATCATTGACTTTGGCCTTGCTAAGAAATATAGAGATACCTATACACATCAGCATATTCCTTACAGAGAGAACAAGAATTTGACAGGAACTGCTAGGTATGCTAGTATGAATACTCATCTGGGAATTGAGCAAAGCCGTAGGGATGATTTAGAATCACTTGGATATGTTCTTATGTACTTTTTAAGAGGAAGTTTGCCTTGGCAGGGATTGAAAGCTGGTACTAAGAAGCAGAAGTATGAGAAGATTAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTCTGTCGTGGCTATTCCTCTGAATTTGCTTCGTACTTCCATTATTGTCGTTCGCTGAGGTTTGATGATAAACCAGATTATGCATATTTGAAAAGACTTCTACGTGACCTTTTCATTCGGGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAGCTCAAAGTGCCACTGCCCCTGCTCGTGCTATTGGTCCTGCTGCTGGACCAAGTTCTGGTATGCCACCACTGGCTGCAAATGCTGATGGACAGTTAGGTGGGGAGGATGGTAGAGATACTAATTGGTCTTCATCAGATCCTACTCGTAGGAGAAACGCTGGACCTATTGCTAATGATGGAATCTCGTCTAGACAAAAAGGCCCTGTTACATATGACTCAACTGGATCTAAAGACGTTATGTTGTCAAATTCTAATTTCTTCCGGTCAAGTGGAGCTGCTAGGCGAGGTGGTCGTGAATCCCGTGACGTAGTTGGCAGTGAAACCGATGCCTCCCGTACCCTGACCCTGGATTCAAGTCAGGGAGCAGTTCGTAAAATCTCTGCCCCTGGTGCTCAGAGAGGTTCAGCTATCATGTCATCTGAGCAAAACCGAACATCCTCTGGCAGAAACACATCCAACATAAAGAATTTGGAGACAACTCTTAGGGGTATTGAGAGCCTGCATTTCAATGAGGAGAGGGTACATTATTAGCAGCTACCACTCTCGATCACCTTTCTTTGTAAATTCTAAAAGGCTTATACTCTTCTTGACGAACTAAGGAGTGGAATGTTGAAGAAAAAAGCTGCGAACAAGTTGGGAACTATCCTTCATAAGTATACAATAAAGACATGTCTGGGCAGCTTCCTAACTAAACTGGCCTTGGCCTTGGCCTTGTAAAAAAGGCGTTCTGTTCATACAGTTTGTGTTATACTGACAAAATGTTTTGCTTCACCTCTACGATCGTTTTCTCTGATTGCTAAGATATTTCGTCGTCATGTTTGTCTCTTGCTTTTTTAGCCTACACTTTGTGACAAACTATATAAGTCGGAAAGCAGCGCACGATTTTCTGAGCAAGATGTCGCTATAACGTCAATAAAAGCTTTATTGCGTGGCAATAGAGCATAGTTCAAGGTTTTAATTGGATCGCTCTGAATAACTCCTGGTTTTTAATTGCTCTTATCCTATGGTCGGTTGTATTGATAGAAAAACATAAAAAAATGCTAACATATACAATCGAACAGATGGGTGAACTTTACGTAAATGAGCTGGATCAAGATTTTTAAAGGTATTCGAAAACGAGAGGACTCCTCTTAGGATGAGGCTTAAGGCCAACTATTTTGTTTTATAATTGGTTGTGTATGGTGATGGGTACCTGCA 2124 0.412 MDESARRGFCPVMEARIGNKFRLGRKIGSGSFGEIYLGTNVQTNEEVAIKLENVKTKHPQLSYESKLYKILQGGNGIPNVKWYGVEGEYNVLVMDLLGPSLEDLFNFCNRKLSLKTVLMLADQMLNRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTYTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYSSEFASYFHYCRSLRFDDKPDYAYLKRLLRDLFIREGFQFDYVFDWTILKYQQAQSATAPARAIGPAAGPSSGMPPLAANADGQLGGEDGRDTNWSSSDPTRRRNAGPIANDGISSRQKGPVTYDSTGSKDVMLSNSNFFRSSGAARRGGRESRDVVGSETDASRTLTLDSSQGAVRKISAPGAQRGSAIMSSEQNRTSSGRNTSNIKNLETTLRGIESLHFNEERVHY 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01083 485 MobiDBLite consensus disorder prediction 372 399 - -
Pste6g01083 485 MobiDBLite consensus disorder prediction 442 462 - -
Pste6g01083 485 SUPERFAMILY Protein kinase-like (PK-like) 17 302 IPR011009 -
Pste6g01083 485 FunFam Putative Casein kinase I 13 97 - -
Pste6g01083 485 SMART serkin_6 21 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g01083 485 FunFam Casein kinase I isoform delta-like 13 320 - -
Pste6g01083 485 CDD STKc_CK1_delta_epsilon 20 294 - -
Pste6g01083 485 MobiDBLite consensus disorder prediction 318 419 - -
Pste6g01083 485 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Pste6g01083 485 PANTHER CASEIN KINASE-RELATED 19 406 - -
Pste6g01083 485 MobiDBLite consensus disorder prediction 434 462 - -
Pste6g01083 485 Pfam Protein kinase domain 22 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g01083 485 Gene3D Transferase(Phosphotransferase) domain 1 6 322 - -
Pste6g01083 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Pste6g01083 485 MobiDBLite consensus disorder prediction 346 360 - -
Pste6g01083 485 ProSiteProfiles Protein kinase domain profile. 21 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01083 Pste-Chr6 4461963 4466863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01083 19 235 EF-hand Containing Proteins AT2G17890 26.222 1.93e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Pste6g01083 Pkinase 2.3e-27 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03515 3 27660692 27665677 Pste6g01083 6 4461963 4466863 PCT