Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01080 ATGGAAGCTCGAATTGGAAACAAGTTCCGTCTCGGTCGGAAAATCGGTAGCGGATCTTTCGGGGAGATCTATCTTGGAACTAATGTTCAGACAAACGAAGAGGTTGCGATTAAGCTTGCTTTAGGAGAACAAACGGAGGACAAGGGGCAGTTTGATAGTTCTAAAGGGAGGATAAGGGCGAGGCTTCGGAGGAGCCATCTTTACACATTTGGTTGCCTTAAGCCTTCTACCACTGAGGAGGCACCTCATCCACTTCAAGGTCCCGGGTTCTCTCGAACAGTGTATTGCAACCAGCCTCTACTCCATGACAAGAAGCTTCTATTTTACTCTAAGAATGACATATCCACGACCAAGTACAATGTTGTTACGTTTTTCCCCAAGGCACTCTTTGAACAATTTCGCAGGGTTGCTAATATATACTTTCTTTTGGCTGCGTGTTTGTCAGCATCTCCAATTTCGCCTTTCAGCCCTCTGAGCATGATTGCTCCTTTGGCATTTGTTGTGGGGCTTAGTATGGCAAAGGAAGCATTGGAAGATTCACGCAGGTTCCTTCAGGATGTGAAAGTTAATCGTCGGAAGGTTGATCGCCATAAAGGTGAAGGTGTTTTTGGTCCCAAGTCGTGGCAGAACATTATGGTTGGGGATGTGTTAAAAGTGAAGAAAGATCAATTTTTTCCAGCTGATTTGCTTTTCTTGTCATCGAGTTATGAGGATGGCATATGCTATGTGGAGACTATGAATTTAGATGGTGAGACCAACTTGAAGGTAAAAAGATCTTTGGAGGCTACCTTGAATCTTGATAATGATGAAGTTTTTAAAGACTTCAATGGAACAATACGTTGTGAAGACCCCAATCCCAATCTTTATATGTTTGTTGGAAATCTTGAGTATGAGCGCCAAATTTATCCTCTTGATCCTAGTCAAATTCTTCTCCGAGATTCTAAGCTCAGGAACACTGATTACATTTATGGGGTGGCCATTTTCACTGGCCATGACAGCAAAGTCATGCAGAATTCTACAAAATCCCCTTCAAAAAGGAGCACAATAGAAAAGAAGATGGATTATATCATATACACCCTCTTCACTGTCCTTATTTTGATATCTGTGATTAGTTCCATAGGGTTTATCTTTAAGACTAAGTTTCAAACACCACAGTGGTGGTATTTACGCCCAGACAGTATTGAGGATCAGTATGATCCCAAGAAAGTTGGAGTGGCTGGAATGAGTCATCTGATTACCGCACTCATTCTTTATGGATATTTGATACCCATCTCACTTTATGTTTCCATTGAGGTTGTAAAGGTTTTACAGGCAACCTTCATCAACCAAGACATTCAAATGTATGATGAAGAAACCGGGACTCCAGCGGATGCACGGACATCAAATTTGAATGAAGAGTTGGGTCAAGTAGATACTATTCTGTCAGATAAAACTGGAACTTTGACCTGTAATCAAATGGAGTTTTTGAAGTGCTCTATTGCAGGTACTGCATATGGTGTGCGCCCTAGTGAAGTTGAACTCGCTGCAGCAAAACAGATGGCTTCTGATCTTGAGGACCAGGATTCAGATCTCTCCAATTTCCCCATGACTAACACTAAAGCACGAGTTTCATGGGATAATGTTAGAAGAGCTAAAGAAATTGAACTGGAGACTGTTGTTACCTCCAAAGGAGATGAGGATCAAAGCCAAAGTCATGCGATAAAGGGATTTGCTTTTGAAGATGACCGCCTCATGAACTGTAATTGGTTAAAAGAGCCCAATGCAGATGACCTTTTAATGTTCTTCCGAATATTAGCAGTTTGCCACACTGCCATTCCTGAGTTGAATGAGGAGACCGGCATTTTTACATTTGAAGCTGAGTCTCCTGATGAAGGGTCTTTTCTTGTAGCAGCAAGAGAATTTGGCTTCGAGTTTTGTAGAAGGACTCAGCTCAACCCGCATCAGAGTTCCGAAATTAGCTTTTGCCTTTTAATTCTTTCAAACAATGTGTCCTCTATTAATGTACTTTTGGGTGAATTCTACAGAGAATACAAACTTTTGAATCTTCTGGATTTCACTAGTAAGAGAAAGCGAATGTCAGTGATTGTGCGTGATGAGGAGGGCAGGCTTTTTCTTATGTGCAAAGGGGCTGACAGTATAATATTTGATCGAATGTCAAAGAATGGAAAAATGTATTTGGAGGCTACTACTAGACATTTAAATGAATATGGAGAAGCTGGTTTGAGAACACTAGCCTTGGCTTATAGAAAGCTTGATGAACAAGAATACACTGCTTGGAACAATGAATTTCAGAAAGCCAAAGCATCTGTTGGGGATGACAGAGATTCAATGCTTGAGCGGATATCAGATATGATGGAAAAAGAGTTGATTCTTGTTGGAGCTACTGCTGTGGAAGACAAATTGCAGAAAGGGGTGCCCCAATGTATTGATAATCTGGCTCAGGCTGGTCTCAAGATGTGGGTGTTGACAGGGGATAAGATGGAAACTGCAATCAACATTGGTTTGCTTCGACAGGGCATGAAACAGATCTGCGTAACTACTCCGAGTTCAGATTTTGTACCCAATGATGTCAATAAGGCCATCAAGGACAACATTTTAAATCAACTTACCAATGCTTCCCAAATGATAAAACTGGAGAAGGATCCGCATGCTGCATTTGCATTAATTATCGATGGGAAAACTCTTACATATATTTTAGAAGATGATATGAAGCACCAATTTTTGGGATTGGCTGTTGATTGTGCTTCTGTCATCTGCTGTCGTGTGTCTCCCAAGCAAAAGGCATTGGTAACAAGATTGGTGAAGCAAGGTACTAGGAAGACTACACTAGCAATAGGCGATGGTGCAAATGATGTTGGCATGATTCAAGAAGCAGATATTGGTGTTGGAATTAGTGGAGTTGAAGTGATGGCTAGTGACTTTGCGATTGCCCAATTTCGATTTTTAGAGAGGCTCCTGGTAGTTCACGGACATTGGTGTTACAAGAGAATTGCACAAATGATATGTTATTTCTTCTACAAGAATATAGCATTTGGCCTCACCATCTTCTATTTTGAGGCCTTCACTGGCTTCTCTGGTCAATCGGTTTATGATGACTGGTACATGATATTGTTCAATGTTGTTCTGACATCATTGCCTGTCATTTCACTCGGTGTTTTTGAACAAGATGTTCCATCAGAAGTTTGTTTACAGTTTCCTGCACTATATCAACAAGGGCCCAAGAATTTGTTCTTTGACTGGTATAGAATATTTGGATGGATGGGCAATGGTCTCTATTCCTCCCTAATCATCTTCTTCCTCATGGTCACCATTTTCTACGACCAAGCATTCCGTACTGATGGTCAGGTAGCTGACATGGCTGTTGTTGGCACCACTATGTTCACTTGCATCATCTGGGCTGTCAACTGTCAAATTGCACTTACGTTGAGCCACTTCACATGGATTCAACACCTGTTTGTATGGGGCAGCATAGCCACTTGGTACATCTTTCTCGTCTTGTATGGAATGATTTCTCCGGAATATTCCAAGAGTGGCTACCAAATACTGGTTGAAGCTCTAGGTCCTGCACCTATTTATTGGATAACAACCCTTTTAGTTACCGTTACATGCAATCTTCCTTATTTTGCCCACATATCCTTCCAAAGATGTTTCAATCCTATGGATCATCACATTATCCAAGAAATCAAGTACTACAAAAAGGATATTAAAGATCAACATATGTGGACAAGGGAGCGTTCTAAAGCTAGACAGGAAACCAAAGTTGGGTTCACGGCAAGAGTGGAAGCAAAGATCAGACAACTTAAGGGAAGGCTTCAGAAGAAACAATCTACCTTGGCTATCTCTCCCCCATCGTGA 3855 0.4132 MEARIGNKFRLGRKIGSGSFGEIYLGTNVQTNEEVAIKLALGEQTEDKGQFDSSKGRIRARLRRSHLYTFGCLKPSTTEEAPHPLQGPGFSRTVYCNQPLLHDKKLLFYSKNDISTTKYNVVTFFPKALFEQFRRVANIYFLLAACLSASPISPFSPLSMIAPLAFVVGLSMAKEALEDSRRFLQDVKVNRRKVDRHKGEGVFGPKSWQNIMVGDVLKVKKDQFFPADLLFLSSSYEDGICYVETMNLDGETNLKVKRSLEATLNLDNDEVFKDFNGTIRCEDPNPNLYMFVGNLEYERQIYPLDPSQILLRDSKLRNTDYIYGVAIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISVISSIGFIFKTKFQTPQWWYLRPDSIEDQYDPKKVGVAGMSHLITALILYGYLIPISLYVSIEVVKVLQATFINQDIQMYDEETGTPADARTSNLNEELGQVDTILSDKTGTLTCNQMEFLKCSIAGTAYGVRPSEVELAAAKQMASDLEDQDSDLSNFPMTNTKARVSWDNVRRAKEIELETVVTSKGDEDQSQSHAIKGFAFEDDRLMNCNWLKEPNADDLLMFFRILAVCHTAIPELNEETGIFTFEAESPDEGSFLVAAREFGFEFCRRTQLNPHQSSEISFCLLILSNNVSSINVLLGEFYREYKLLNLLDFTSKRKRMSVIVRDEEGRLFLMCKGADSIIFDRMSKNGKMYLEATTRHLNEYGEAGLRTLALAYRKLDEQEYTAWNNEFQKAKASVGDDRDSMLERISDMMEKELILVGATAVEDKLQKGVPQCIDNLAQAGLKMWVLTGDKMETAINIGLLRQGMKQICVTTPSSDFVPNDVNKAIKDNILNQLTNASQMIKLEKDPHAAFALIIDGKTLTYILEDDMKHQFLGLAVDCASVICCRVSPKQKALVTRLVKQGTRKTTLAIGDGANDVGMIQEADIGVGISGVEVMASDFAIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFTGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRIFGWMGNGLYSSLIIFFLMVTIFYDQAFRTDGQVADMAVVGTTMFTCIIWAVNCQIALTLSHFTWIQHLFVWGSIATWYIFLVLYGMISPEYSKSGYQILVEALGPAPIYWITTLLVTVTCNLPYFAHISFQRCFNPMDHHIIQEIKYYKKDIKDQHMWTRERSKARQETKVGFTARVEAKIRQLKGRLQKKQSTLAISPPS 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01080 1284 NCBIfam HAD-IC family P-type ATPase 917 1022 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pste6g01080 1284 ProSitePatterns E1-E2 ATPases phosphorylation site. 476 482 IPR018303 -
Pste6g01080 1284 PRINTS P-type cation-transporting ATPase superfamily signature 945 964 - -
Pste6g01080 1284 PRINTS P-type cation-transporting ATPase superfamily signature 474 488 - -
Pste6g01080 1284 Pfam Phospholipid-translocating P-type ATPase C-terminal 969 1219 IPR032630 -
Pste6g01080 1284 Gene3D - 168 340 - -
Pste6g01080 1284 SFLD p-type atpase 457 992 IPR044492 -
Pste6g01080 1284 SUPERFAMILY Calcium ATPase, transmembrane domain M 105 1216 IPR023298 -
Pste6g01080 1284 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 569 754 IPR023299 GO:0000166
Pste6g01080 1284 Coils Coil 1257 1277 - -
Pste6g01080 1284 SUPERFAMILY HAD-like 462 985 IPR036412 -
Pste6g01080 1284 FunFam Phospholipid-transporting ATPase 792 981 - -
Pste6g01080 1284 NCBIfam phospholipid-translocating P-type ATPase 109 1227 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Pste6g01080 1284 Gene3D - 471 485 IPR023214 -
Pste6g01080 1284 SUPERFAMILY Calcium ATPase, transduction domain A 201 338 IPR008250 -
Pste6g01080 1284 FunFam Phospholipid-transporting ATPase 170 340 - -
Pste6g01080 1284 SUPERFAMILY Protein kinase-like (PK-like) 4 41 IPR011009 -
Pste6g01080 1284 Gene3D - 788 981 IPR023214 -
Pste6g01080 1284 Gene3D - 668 768 IPR023299 GO:0000166
Pste6g01080 1284 Gene3D - 486 522 IPR023299 GO:0000166
Pste6g01080 1284 Gene3D Phosphorylase Kinase; domain 1 1 54 - -
Pste6g01080 1284 CDD P-type_ATPase_APLT_Dnf-like 112 1100 - -
Pste6g01080 1284 Pfam Cation transport ATPase (P-type) 620 719 - -
Pste6g01080 1284 Pfam Phospholipid-translocating ATPase N-terminal 94 161 IPR032631 -
Pste6g01080 1284 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 77 1238 - -
Pste6g01080 1284 FunFam Phospholipid-transporting ATPase 664 790 - -
Pste6g01080 1284 SFLD Haloacid Dehalogenase 457 992 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01080 Pste-Chr6 4444165 4451594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01080 54 1279 Primary Pumps ATPases AT1G17500 72.713 0.0 1871