Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01073 atgtcgtcttcatcctcgcacgtgtggaagtacgacgtgttcgtgagcttcaggggacctgacgttcgttctagtttcctctcacacctcaaagctgcaatggcaaatgcaggaatcactactttcaccgacgcaaagcttaaaccgggagacaagttaacaccagcattgaaggcagccatagaagggtctcgaatatttgtagtcattttctccataaactatgtttcgtcttggtggtgtcttcacgagcttgtccaaatcatggaacgtcgaagaacttacggccagatggtttttcctgtattttacaatgttgatccagcggatgttcgccatcaaacgggtgattttggggaacgcttagaagaatgtttatgcaaaaccagatttgctgatagaaaaacaattaagagtgctctaaaggaggctgcaaatcattccggatggcacaagaagaattttaggagtgatgttggattaaaatctcgtgtgcaacaagtgattgagcttattaaagatcactcaggaagaggttgtattgtagggctttggggcatgggtggtttgggtaaaacaaccattgccaaagtgatctacaacgtatttcgtcaaagatttaggcgtagttttgttgaaataaataataaagggcatgttggtttgcaagaaaaacttctttcagatgtcctaaagaaaaaggtcatgatacatagcatcacaatggggataactttgatagagaaaatacgttctcgagaaagagttctaattatacttgatgatgtgacagagtttcaacaattgagaatcttgtgtggaaattgtcaatggattgatcaaggaagtgtacttgtcataacaactagagatatacgtctgcttgatgaacttaaagattatcatccagtcaatatttttaaaacaaaggaaatggatgaaaaggagtctcttgagctttttagcaagcatgctttcagagaagcagttcttacaaacaattggaataaactctcaactgatgttgttgcttactgtggaggactaccacttgctcttgaggttcttggatcttacttacgtggaaggacgaaagagcaatgggaaaatgtattagcttatgttgttgagatactaaatggttgtggattatgtgctgatattggaatcactgttcttatagagcgtagtctcataaaagttgaaaagaacaacaaacttggaatgcatcctttgttacgagatatggggagagagataatttgtacaagttcaagaaatgaacctgaaatacttaacgtattaacaaacaatactggcacccaagctattcgaggattgactcttaaatctcccttcactaatacagtttccttcgaagcttatgcttttgagaaaatgaagggattaagactattgcaacttgatcatgtacaactctccggaaattacgggtatctctctaagcaactgagatggatctattggcgagggtttcctttaaagtacattcctgacaactttgatatgaaaggtgtatatgtgatagattttaaacacagtactcttagactactatggaaaaaaccacaggttttgccatggctaaaaatccttagtcattccaagtgcttgagagaaacccctgacttttcaggattaccaagtcttaaaaatcttatacttaaagattgtccaagtttgagcaagattgagaaattggaagaagacatagggcagatggaatccttgacaactctaattgctgataatactgctgtgaaacaagttcccttttcaataaataatgatattggtgatcttgtaccaattcttaggaacctttcaaagcaacgaagagttttggtgcaatgtgacacgctgcttcaacattccttgaggtcttatttgattggcattggaagctaccaagaagtcttcgatactctaagcaagagcatatctgagggattggctacctgcaatgagtcttgtcatgtttttcttcccggtcataattatccttattggttggcccattcaagtgaggggctttcagtgcatttcactgtgcctgagaattgttgtatcaagggaatgacattgtctgttgtatatttatcagacccaaataacactatagctgaatgtctttctagtgtcttatttgttacttatacaaagtacacaatccagatattcaagagagacacagtaatttcctttaatgatatagattggcagggtttaatgtcacatttgggacctggagatgaggtggagatttctgtgacctctgagcatgaattggttgttaagaagacagcaatctatctaatctgtgatgaatcaagtgacatggaagtggagtcttctcccaagccaacctatataagattgttaaagaaaaatctcattgtggcattaggactttttcttttcttttcttaccactccctcacaacaaaaaagagttccctctctcactcctag 2493 0.0 MSSSSSHVWKYDVFVSFRGPDVRSSFLSHLKAAMANAGITTFTDAKLKPGDKLTPALKAAIEGSRIFVVIFSINYVSSWWCLHELVQIMERRRTYGQMVFPVFYNVDPADVRHQTGDFGERLEECLCKTRFADRKTIKSALKEAANHSGWHKKNFRSDVGLKSRVQQVIELIKDHSGRGCIVGLWGMGGLGKTTIAKVIYNVFRQRFRRSFVEINNKGHVGLQEKLLSDVLKKKVMIHSITMGITLIEKIRSRERVLIILDDVTEFQQLRILCGNCQWIDQGSVLVITTRDIRLLDELKDYHPVNIFKTKEMDEKESLELFSKHAFREAVLTNNWNKLSTDVVAYCGGLPLALEVLGSYLRGRTKEQWENVLAYVVEILNGCGLCADIGITVLIERSLIKVEKNNKLGMHPLLRDMGREIICTSSRNEPEILNVLTNNTGTQAIRGLTLKSPFTNTVSFEAYAFEKMKGLRLLQLDHVQLSGNYGYLSKQLRWIYWRGFPLKYIPDNFDMKGVYVIDFKHSTLRLLWKKPQVLPWLKILSHSKCLRETPDFSGLPSLKNLILKDCPSLSKIEKLEEDIGQMESLTTLIADNTAVKQVPFSINNDIGDLVPILRNLSKQRRVLVQCDTLLQHSLRSYLIGIGSYQEVFDTLSKSISEGLATCNESCHVFLPGHNYPYWLAHSSEGLSVHFTVPENCCIKGMTLSVVYLSDPNNTIAECLSSVLFVTYTKYTIQIFKRDTVISFNDIDWQGLMSHLGPGDEVEISVTSEHELVVKKTAIYLICDESSDMEVESSPKPTYIRLLKKNLIVALGLFLFFSYHSLTTKKSSLSHS 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01073 830 Gene3D - 145 303 IPR027417 -
Pste6g01073 830 SMART till_3 10 147 IPR000157 GO:0007165
Pste6g01073 830 SUPERFAMILY L domain-like 454 616 - -
Pste6g01073 830 Gene3D - 311 378 IPR042197 -
Pste6g01073 830 ProSiteProfiles TIR domain profile. 9 176 IPR000157 GO:0007165
Pste6g01073 830 Gene3D - 1 143 IPR035897 -
Pste6g01073 830 Pfam TIR domain 10 143 IPR000157 GO:0007165
Pste6g01073 830 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 630 IPR044974 GO:0006952
Pste6g01073 830 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 150 IPR035897 -
Pste6g01073 830 Pfam NB-ARC domain 164 372 IPR002182 GO:0043531
Pste6g01073 830 PRINTS Disease resistance protein signature 552 568 - -
Pste6g01073 830 PRINTS Disease resistance protein signature 250 264 - -
Pste6g01073 830 PRINTS Disease resistance protein signature 346 360 - -
Pste6g01073 830 PRINTS Disease resistance protein signature 181 196 - -
Pste6g01073 830 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 379 IPR027417 -
Pste6g01073 830 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 176 - -
Pste6g01073 830 Gene3D Ribonuclease Inhibitor 414 629 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01073 Pste-Chr6 4387770 4401581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01073 11 565 WRKY Transcription Factor Family AT4G12020 24.810 1.01e-43 170