Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01056 TCTCACCTTTTTCTTTCAAAAACTAACACAAAAACTGAAAATTTGGTACTTACTTTGAGGCTTGAAATTGAGATAGGGGGAAAAAGAAAGAAAGACAACATGGGGCATCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGGGGGCTATGGTCACCTGAAGAAGATGAAAAACTAGTCAACTACATCACAACTTATGGACATGGTTGCTGGAGCTCAGTCCCAAAACATGCAGGCCTTCAGAGGTGCGGAAAGAGCTGCAGATTAAGATGGATCAATTATCTAAGACCTGATTTGAAACGTGGGAGTTTCTCTCCTCAAGAAGCTTCCCTCATTATTGAACTTCACAGCATTTTAGGGAACAGGTGGGCTCAGATAGCCAAGCACCTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAGAAACTCCTTTCTCATGATGTTATTCCTGCTTTAGCCACATTTTCTGATTTTCGCAGCCCCGGCAGCATTGGTTGTATGGAAAGTTTATTCCCTTTTACTGCAAACCCTAATGTGATCTTAAACTTTCATCATCACCCTGACCAGCTCTACCTTCCCTCACAAGCCCCAATCCTACAAGGCTTTGCTCATAATAATGATATTAAGTTAGAGATTAACTCTTACAATGCCAACAATTTCCTTCATATTCAGAATCCAACACCAGAACCGGTACCACTACAATCCTCCTATGAAGACGCATGGTCATTGGGTTGTGTAGCTCTACATCTCAATCCAAATCAAGAAAATCAAATTACCAAAAGTAATACCACCCCACATTGTGTTCTTGACAAATTCATTAGCCCAACTGCTTTGCAGCAATATGAATGTCAGTTAGTAGAATCCCTTGTGCCAAAAGTCAGTGAGAGCATCGAGGATTATGTTTGTAGCATCCCATACTCATCTGCTTCCCAGGAACAACATGAAGCTACAGCAAAATTTCAGTGTTATCCACCAGATCTAACTGTGCCACCCAGTCAATTAGAGTACATTAATGCCTTCATCTCATCGTTGCCCTCTTCAACCACATCATCAGTATCAAACACCCAAGTAGTCCCAAACCCTATTATTCCATCAGGATATGGGAGCCTTGAACGTTGGTAG 1140 0.4132 SHLFLSKTNTKTENLVLTLRLEIEIGGKRKKDNMGHHSCCNKQKVKRGLWSPEEDEKLVNYITTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEASLIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDVIPALATFSDFRSPGSIGCMESLFPFTANPNVILNFHHHPDQLYLPSQAPILQGFAHNNDIKLEINSYNANNFLHIQNPTPEPVPLQSSYEDAWSLGCVALHLNPNQENQITKSNTTPHCVLDKFISPTALQQYECQLVESLVPKVSESIEDYVCSIPYSSASQEQHEATAKFQCYPPDLTVPPSQLEYINAFISSLPSSTTSSVSNTQVVPNPIIPSGYGSLERW 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01056 379 ProSiteProfiles Myb-like domain profile. 42 94 IPR001005 -
Pste6g01056 379 FunFam Myb transcription factor 102 149 - -
Pste6g01056 379 CDD SANT 50 94 IPR001005 -
Pste6g01056 379 Gene3D - 102 149 - -
Pste6g01056 379 SMART sant 99 147 IPR001005 -
Pste6g01056 379 SMART sant 46 96 IPR001005 -
Pste6g01056 379 Pfam Myb-like DNA-binding domain 100 142 IPR001005 -
Pste6g01056 379 Pfam Myb-like DNA-binding domain 47 94 IPR001005 -
Pste6g01056 379 SUPERFAMILY Homeodomain-like 44 141 IPR009057 -
Pste6g01056 379 CDD SANT 102 142 IPR001005 -
Pste6g01056 379 PANTHER MYB DOMAIN PROTEIN 55 34 208 - -
Pste6g01056 379 Gene3D - 44 100 - -
Pste6g01056 379 FunFam MYB transcription factor 39 99 - -
Pste6g01056 379 ProSiteProfiles Myb-like domain profile. 95 145 IPR001005 -
Pste6g01056 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 98 IPR017930 -
Pste6g01056 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 149 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01056 Pste-Chr6 4314177 4315565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01056 34 151 MYB Transcription Factor Family AT3G13890 95.763 9.14e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste6g01056 Myb_DNA-binding 4.5e-15 CL0123