Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01054 atggagtcatcctcatcctccacaagccactggatctacgatgtgttcttgagctttagaggagaagacacacgtaataactttgttggtgatctctattccgcccttacaaacgagggaatcatgactttcattgatgatgggcttcccaggggaaaggagataaaagcagaactagtgcgagccatacaagggtctcgaatgtccatcatcgttttctctgagaactacacttcttctaagtggtgtcttgatgagttggtcgaaatcatggaatgttgtagaacttatggtcaggcagttttgcctgtattttactatgttgatccatcggatgttcgtcatcaaaggggtgcttttggagagcacttggaagcacttcaagcaacacccgaagtgttacggaaatggaagagtgcacttatggaggctgcaaatatttctggttgggatgcaaggaataggaatgaaagccaaatagtgaaggaacttgttaacgaaataaatggaagactagacatagacttattatcaattacagaattcccagttggattagagtcccgtgtgcagcaagtgaccgagtttattgaagctcattcacacagtagttgtattgtaggaatctggggcatgggtgggttgggcaaaacaaccatagccaaattcatctacaataaaattcgatggaaattcaagcgtagatgttttattgaaaacattagagaagttgatgtgcagaatagtaaagagtgtattgctttgcaagaaaaacttctttttgggctccaaattaacacaagggagaagattcacagtgttgcaatgggaacagctaccattgagaaaagcattcttgaagaaagggctctgattgtacttgatgatgtgactgattttgagcaattggaagctctatctgtaaatcgtataaggatgggtaaacaaaaaaatgtaatcatcattacaaccagagatgaacgcttgcttaatctccttgaagctcgtaattatacagtccatatctatagaacaaaggaattggacaagaatgagggtcttgagcttttcagttggcacgcctttagacaacaatatccaagagaaaacttggttaaactctccactgaggtggttgcttattgtggaggactaccactagctcttgaagtccttggatcttttttatctgagaggaccaaagaagaatgggaagaagtgttgtcaaaactgaagaaaattcccaatgacaaagtgcaagagaaactgaaaataagttatgatggtttagattatgaccaaaagaagatattcttggatgtatgttttttctttattggcaaggatagggctgatgttatagagatactaaaaggttgtgaccttcatcctgtgactggattaacaacccttgttgaaaggagcctcataaagcttgaaaagaacaacaagctcaatatgcatgatttgatacgtgatatgggaagagaaattgttcgtcaaagttctgaagaagaacctgagaaacgtagtcgattgtgggttcaccaagaagtgcttgatgttttgaaacatgaaaccggaacaaaagcaattgagggcttgattttgaagaaaagaaccagtgaacttcaattcaatacccaagcatttatggaaatgaagaaattgagacttttgcagcttgatcatgtacaacttgttggagattatgagtatcttaacgaaaacctaagatgggttagtttgaaaggatttcctctaaaacatataccagacaacttgtatcagaaaaatctaatttctattgaattgaagtatagtaatattagattaccttggaaggtgccccagtttctggcaaagctaaagatcctcaatcttagccattcaaggaagttaatgcacacccctgatttttcaaaactaccaaatcttgcaaagctcattcttaaagactgtccaagtttgtctgaggtagaccaatccataggagatctaactaatcttcttgtgatcaatttgatggactgcacaagccttagcaatcttccaaggacgttctatcagttgaaatctttgcaaactctgatcctttctggttgttccaagattgacaagttggaggaagatatagaacagatggaatccttgactacactgattgcaaaagatacaaatgtaatggaaatgcctcattcaatagcaagattaaaaagcattggatatatatccctgtgtggacatgaaggattagcacgtgatatttttccttcactcatatggtcttggatgtcaccaacaactaatcttggatctagtactcaaccatttgggagtatgtcaacttctctaatctccatggatatacaacaaaaacattgtggtgacctattgccaatgcttcgtggagtttcaagacatcgatgtattttagtgcaatgcaattcagagggtcaactaacccatgagttaaaaagaattgtggataccttatgtgatgtaaactttactgaattgggaaacacatcttatccatcagaaaatgcagagaatatcatggaatattatttgattgaaatgggaagctacgaccatgtcgtcaatatgcttagcaatagcatatcaaagggattgagaaccaataattctagtgatttttcccttccgggtgactatcatccttattggctagcttatattggtcaagggcatgcagtacattttcatctacccgaggatagtcatcgtttgaagggaatgactttgtgtgttgtttattcatcaacttgtaaaaacatggcagttgcatgtcctacttgtgtcttgattgttaatcatacaaagtccaccattcaaatatacaagcgagacacaataacttcctttaatgatgaagattggcaagggataatatcaaatctaagacctagtgacaatgtgcagatttgtgtagcacttggacacggattgacagttcagaaaacagctatctatctaatatatggtcagccaacttttgagaaaatggagcaatcgcctaaggtgaacatgcaactatcagcaaatgtgatagtggagttatcatccaacatgaaaacagaaacatcacctaatgtgaaaatggagcaattacctaatataaaatcagagccatcaaggaagcaaaagaaaagtaccttttcacgactcacaaagaaaatggaagaatgttcatgctttaagcacaaaagaggtttcaactag 3246 0.0 MESSSSSTSHWIYDVFLSFRGEDTRNNFVGDLYSALTNEGIMTFIDDGLPRGKEIKAELVRAIQGSRMSIIVFSENYTSSKWCLDELVEIMECCRTYGQAVLPVFYYVDPSDVRHQRGAFGEHLEALQATPEVLRKWKSALMEAANISGWDARNRNESQIVKELVNEINGRLDIDLLSITEFPVGLESRVQQVTEFIEAHSHSSCIVGIWGMGGLGKTTIAKFIYNKIRWKFKRRCFIENIREVDVQNSKECIALQEKLLFGLQINTREKIHSVAMGTATIEKSILEERALIVLDDVTDFEQLEALSVNRIRMGKQKNVIIITTRDERLLNLLEARNYTVHIYRTKELDKNEGLELFSWHAFRQQYPRENLVKLSTEVVAYCGGLPLALEVLGSFLSERTKEEWEEVLSKLKKIPNDKVQEKLKISYDGLDYDQKKIFLDVCFFFIGKDRADVIEILKGCDLHPVTGLTTLVERSLIKLEKNNKLNMHDLIRDMGREIVRQSSEEEPEKRSRLWVHQEVLDVLKHETGTKAIEGLILKKRTSELQFNTQAFMEMKKLRLLQLDHVQLVGDYEYLNENLRWVSLKGFPLKHIPDNLYQKNLISIELKYSNIRLPWKVPQFLAKLKILNLSHSRKLMHTPDFSKLPNLAKLILKDCPSLSEVDQSIGDLTNLLVINLMDCTSLSNLPRTFYQLKSLQTLILSGCSKIDKLEEDIEQMESLTTLIAKDTNVMEMPHSIARLKSIGYISLCGHEGLARDIFPSLIWSWMSPTTNLGSSTQPFGSMSTSLISMDIQQKHCGDLLPMLRGVSRHRCILVQCNSEGQLTHELKRIVDTLCDVNFTELGNTSYPSENAENIMEYYLIEMGSYDHVVNMLSNSISKGLRTNNSSDFSLPGDYHPYWLAYIGQGHAVHFHLPEDSHRLKGMTLCVVYSSTCKNMAVACPTCVLIVNHTKSTIQIYKRDTITSFNDEDWQGIISNLRPSDNVQICVALGHGLTVQKTAIYLIYGQPTFEKMEQSPKVNMQLSANVIVELSSNMKTETSPNVKMEQLPNIKSEPSRKQKKSTFSRLTKKMEECSCFKHKRGFN 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01054 1081 SUPERFAMILY L domain-like 487 806 - -
Pste6g01054 1081 Gene3D - 178 341 IPR027417 -
Pste6g01054 1081 MobiDBLite consensus disorder prediction 1035 1061 - -
Pste6g01054 1081 Pfam NB-ARC domain 188 421 IPR002182 GO:0043531
Pste6g01054 1081 Gene3D - 6 177 IPR035897 -
Pste6g01054 1081 PRINTS Disease resistance protein signature 206 221 - -
Pste6g01054 1081 PRINTS Disease resistance protein signature 382 396 - -
Pste6g01054 1081 PRINTS Disease resistance protein signature 689 705 - -
Pste6g01054 1081 PRINTS Disease resistance protein signature 284 298 - -
Pste6g01054 1081 SMART till_3 12 147 IPR000157 GO:0007165
Pste6g01054 1081 Gene3D Ribonuclease Inhibitor 469 796 IPR032675 -
Pste6g01054 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 440 IPR027417 -
Pste6g01054 1081 FunFam Disease resistance protein (TIR-NBS-LRR class) 349 431 - -
Pste6g01054 1081 Gene3D - 347 431 IPR042197 -
Pste6g01054 1081 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 753 IPR044974 GO:0006952
Pste6g01054 1081 ProSiteProfiles TIR domain profile. 11 172 IPR000157 GO:0007165
Pste6g01054 1081 Pfam TIR domain 13 168 IPR000157 GO:0007165
Pste6g01054 1081 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 174 - -
Pste6g01054 1081 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 150 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01054 Pste-Chr6 4303175 4310164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01054 620 741 WRKY Transcription Factor Family AT4G12020 34.426 4.37e-11 65.5