Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01034 TACAAATGGTACTCTCTTTCTGTGGTTGCTTTTTTTGCTCCCTTTTTTGTGCTTACTTTACAAGAGAAGGGAAAGGCAAGCAAGAAGGGTGTATTTGAACAAAAGGTTTTTTAGACAAAACACTTTTAACTCTTTTTTGAAGCAAAAGAAAAACACACAATAAAGAGATAAATATCAAGTGATTTTTCTGGAGTTGAGAAAGAGAACAAAAGAAAAGACAGAAAGCTCAACGTCAGAGTTAGCCGTAAGGTTCTCCTTGTGTTTGTGGTTTTGGACTAGCCGAGGTACCCTCAGAATCCTCTTCTCATCCACACTTCTCTCTCTCTCTCTCTCTGATAATCATGAGTTTAAACTTTAAACAACAGGTTCTATATTTTTGTTCATATTTGTGTGGCTATCCTTGGATTGTATAGTTATTTCCTTGGTAATATTATCATATCATATATATTATGAAGCATGGTTTTCAAACTATGAAGGAGAAAAATACGGATTGCGGCCACACCACCATCTGCTTCACCTCCACTTCTCTTTATCACAACTCACTCTTACTTGTTTCTTCTGCTCTTTCATAAAAGCAAAACTTGTCTCTTGGGTCAGTGCCAAACTAGTAACAAGTTTTCTAGTAGTGGTTATATAGAGAGACTCTCTCAACTTAATTTCTTTCTCTTTTTGTTTATTTCTTTGCTGGAGAGACTTTATTAGTTATTCCTGAGTAGGATATCAATTTCTTTTGCCTCTTAATTTGTTGTGTCTTGCTCTTTCTCTTTCCAGTCTAAGCTGTGTAGACTGTAGTCTACCTTTTCCATTTTTCTTCCCTTTCTATTTTTGGTAAGGCTTGTCCTTAGATCCCAGAAACCTTCCCAACATTTGAAAAACCAAGATCTATGGCCTATAACACAACCTTAGGTTTCTAAACCTTGCAAATATATACATAAATGGAAATGAAGGGTTTTGTGTTCCACCAACAACAGCAGCAACCAGTAGTGGAGGAGAACATGTCAAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTTCCTCAGGTAACAGAACTGAAATTGGAACCAGTTATGCTCAACAATACTTGGCTCAACCACCAACTCAGACTCAACCAGCAAAGAAAAAAAGAAACCTTCCTGGAAACCCAGACCCAGATGCCGAGGTTATAGCCTTGTCCCCCAAGAGTCTTTTAGCCACGAATAGGTTCATTTGTGAGATCTGTAACAAAGGATTTCAAAGAGATCAGAACCTTCAGCTTCATAGAAGAGGCCATAATTTGCCATGGAAGCTGAAGCAGAGAACAAGCAAAGAGGTGAGGAAGAAGGTGTATGTATGTCCAGAGCCAACTTGCGTGCATCATGACCCATCAAGGGCCCTGGGTGATTTAACTGGGATCAAGAAGCACTTCTGTAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCGCCAAGAAGTATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAACCTGTGGCACAAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGAGCCATCACAGGCACAGTTAATAACCCACTTGTTCCCCCACAACCATCTTCCTCTCTTCACCACCACCAAATAAACCTCCAAAGCCAGTTCAACCCCCAAGATCTCCATGCCTTCCCATTGAAAAAAGAGCAACAAAGTTTCAATGCTAGGCCAGAAATGCCCCCTTGGCTAGCCCCACCAACAACAGTTGATCATCTCTCCTCATCCTCATCCATAATGTTCTCTCCTCCTCCATACCAAGAAAACCCTAACCCTAGCCTTGGTCCCACTCTTGCTGCTTACCAAACAGTCCCTAACCCTTCCCCACACATGTCAGCCACAGCATTGCTGCAGAAAGCAGCTCAGATGGGTGCAACCATGAGTAGAAGTGGTTCCTCACCAGCCATGACAAGGGCCCACCATCAGGCTCACGTGTCTTCTTCTGCTGATTCTGCCACTGCTCATTTTGTCTTGAACTTGTCCTCACGTGAAGACACCATCACCACCACCACCACCCCTTCAACAACAACAACTACTACTACTAACACTGCTACAGTGTTTAGCCATGGATTATTATCATCACCTTTGGAGAATAAAGCTGCTACTGCTGTGTCTTCTGCTCCATCTCCATCCCTTCTTCATGATGTTATCAACTCTTTCTCTTCTCCTTCTACCTTTGAAGGAACCCCTTTTGAGGATGCCTTTGGTGGTGCCAGTGCCATTCAGAGTTCCAAAAATGATCATAACATGTATTTGCATGACACCTTCTCAAAAACAAGTGGTGCAATTGGAAATGAAGGGTTGACCAGAGATTTCTTGGGTCTTAGGCCCCTTTCTCATAGTGATATTCTCACCATTGCCGGCATTGGAAACTGCATTCATGATCACCAAAACCAATCTCAAAAGCCATGGCAAGGTTAGCTAGCTAGCTGCATATATACTATATATATGTGGATTTTCTTTTTCATCCTTTAATCATATCTATATCTATATATATATTTTTTTTTTCCCATTTTAATCCCTATAACTTTTATTTATCATCTTTTCGATCTTCCCAAAGGGAAGGACCTTGCTGAATCGATCCCATTATATGTTTTCAATTCGTTATGTAATTACTTACCAATCGCAATA 2714 0.4116 MEMKGFVFHQQQQQPVVEENMSNLTSASGEASASSGNRTEIGTSYAQQYLAQPPTQTQPAKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCAKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITGTVNNPLVPPQPSSSLHHHQINLQSQFNPQDLHAFPLKKEQQSFNARPEMPPWLAPPTTVDHLSSSSSIMFSPPPYQENPNPSLGPTLAAYQTVPNPSPHMSATALLQKAAQMGATMSRSGSSPAMTRAHHQAHVSSSADSATAHFVLNLSSREDTITTTTTPSTTTTTTTNTATVFSHGLLSSPLENKAATAVSSAPSPSLLHDVINSFSSPSTFEGTPFEDAFGGASAIQSSKNDHNMYLHDTFSKTSGAIGNEGLTRDFLGLRPLSHSDILTIAGIGNCIHDHQNQSQKPWQG 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01034 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Pste6g01034 522 Gene3D Classic Zinc Finger 71 137 - -
Pste6g01034 522 SMART c2h2final6 90 112 IPR013087 -
Pste6g01034 522 SMART c2h2final6 131 161 IPR013087 -
Pste6g01034 522 SMART c2h2final6 166 186 IPR013087 -
Pste6g01034 522 MobiDBLite consensus disorder prediction 49 63 - -
Pste6g01034 522 Pfam Zinc-finger double-stranded RNA-binding 90 112 IPR022755 -
Pste6g01034 522 SUPERFAMILY beta-beta-alpha zinc fingers 89 186 IPR036236 -
Pste6g01034 522 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 499 IPR031140 -
Pste6g01034 522 MobiDBLite consensus disorder prediction 49 74 - -
Pste6g01034 522 FunFam protein indeterminate-domain 12-like 69 137 - -
Pste6g01034 522 Gene3D Classic Zinc Finger 144 223 - -
Pste6g01034 522 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Pste6g01034 522 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01034 Pste-Chr6 4209482 4212787 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01034 1 344 IDZ Gene Family AT1G55110 60.955 9.09e-131 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste6g01034 zf-C2H2_jaz 7.7e-05 CL0361