LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g01015	ATGTCTGCAAGGCTCAGAGCTTTAGTTCTGAAAAATAGAAAAAAGGTGGAAACACGGGTGTATTCCACCAAGATCATTCTTGCGCCATTACCAGGTTATTTCATGCTTATTGAGGGCCGAGAGATCTTCAGAGTTGTTGATCTAGTTTTCCTTCTGAAGATAATGGGATTGCAGCTAATTTTCCTACTTATTGAGCTGCATTTAGTTGTCATCACTCAGCAGTTTCATGGACATGCAGCCACCAAGCTGCTACATTCTGGTGACAGAAGCCATTTTAGTATTGCAATCCCACCATCAAAGTCAACTTCTGAAGGTCATTTGAGTATTGCCCACTCACCTTCTGATTCATCTTCTGGTGTGCCTGCAAGTATTGCACTTTCACCTTCCAAGTCAATTCACAAAGCTCCTACTATTATATGGACACATGGTTTTGTGGATTCTCCTATATCACATCATAAGCATCACAATTCCAAAAGAAAGTTCCACAATACAACTCCAGGGCCAACGTACCCAGTCCAGGCTCCTACATACAGTCATCAAGGTCCTTCAGTCTTCAAATCACAACCTCCTTTCATTTCACCAAATATTAAAGATATTCACGTACCTGCACCATCACCAGCTATTAGGCCAAGTCACCTGAATGTACCGTCTTCTGCACCTAGAATTTCTCCTCTAAGGTCATCATTGAAGAAGAAAAAGACTCCACCACCAGCATATACATTGGTTCTTCCACCTCCACCTCCTAATAAGGATTGCTTGTCAATGACTTGCTCGGAGCCCTTGACATATATGCCTCCCGGATCACCTTGTGGTTGTGTATGGCCACTTCAAGTTAAACTCCATATTGACATTGCAATATACAAGTTTTTTCCATTGGTTTCAGAGCTAGCCAAGGAAATTGCAGCAAGTGTTTTGCTGAACCATACCCAGGTTCGCATTGTGGGAGCTGATGCAGCTAATCAGCAACTTGAGAAAACCACTGTTCTCATAGACTTGGTACCCAATGGAGTAAAATTTGATGATACGACTGCATTTTTAATATATAAGAAATTCTGGCACAGGGAGATTCTGATAGATGCTTCTGTCTTTGGTGCTTATGAAGTACTCTATGTTCATTATCCAGGTCTTCCACCATCTCCACCTTCTACTCCCTTGGATGCTTCTGGTATAGATGATGGGCCAAATCCAGGACATGACAACAATGGAATGATGATGAAACCTTTAGGAGTAGATGTCCCAAAGAAGAAAAACGAAGGGAGTAATGGAAGAATGATTGTTATAATTGTGCTGTCATCAATTACTGCTTTTGTTGTATTCATTGGTCTTGCTTGGCTTTGTCTGCTGAAATGTCGCACCTATGTTCATGAACATGAACCAGTTCCTGATGGATTGATTTCATCCTCTTCAAAACAATCAAGGGCTGCTAAGTCTTTGACTCGTGGGATAAGGCCAGGTTCTGGATCACAGTCCTTCAGTTCTGGAACAATAACATATACAGGGTCTGCTAAGATTTTTACTTTAAATGACATAGAGAAAGCAACAAATAACTTTGATTCATCAAGAATATTAGGAGAAGGTGGTTTTGGAGTTGTTTACAAGGGTATTCTAAATGATGGGAGGGATGTAGCTGTAAAAATTCTCAAAAGAGATGATCAACGTGGTGGCCGTGAATTCTTGGCAGAAGTTGAGATGCTTAGCCGGCTACACCATAGAAATTTAGTTAAATTGATAGGAATATGCATAGAGAAGCAGACTCGCTGCTTAGTTTATGAGATTGTCCCTAATGGAAGTGTGGAATCCCACTTACATGGAGCTGACAAGGAAACTGGTCCACTGGATTGGAATGCCCGGATGAAGATTGCTCTTGGTGCAGCTCAGGGATTAGCCTATCTACATGAAGATTCAAATCCATGTGTCATACATCGGGACTTCAAGGCTAGCAACATCTTGTTGGAGCACGATTTTACACCCAAGGTTTCGGACTTTGGATTGGCTAGAACAGCACTGGATGAAAAAAATAAGCACATCTCCACACATGTTATGGGAACATTTGGCTACTTAGCTCCTGAATATGCAATGACTGGCCATCTTCTGGTCAAGAGTGATGTTTACAGTTACGGGGTTGTACTCCTTGAGCTCCTAACTGGAAGAAAGCCTGTGGATTTGTCACAACCACCAGGTCAAGAAAATCTGGTGACATGGGTTCGTCCACTTCTCACAATTAAGGAGGGTTTGCAGATGATCATAGACCCATTTGTAAAGCCTAAGATTTCTGTTGATACTGTGGTAAAAGTTGCAGCAATTGCATCAATGTGTGTGCAACCAGAAGTCTCGCAACGCCCTTTCATGGGAGAAGTTGTTCAGGCCTTGAAGCTGGTGTGCAGTGAGTTTGAGGAAACAGACTACATAAGATCAAGGAGTTATCGAGAGGGTCTTCTAACAGATGTGGAAGGAAAGTTTTCAGAAGGTTCAGGTGAAAGGGAGGAATTTTCAGAGTTTCAAAAAACACTTTCTGGTTATCAATCTGGTGAAGAAAAGGTAGGATTATCAGCATCAGAGTTGCTCAGTACTTCAGGTCAGGAATTTGAGTCATTCAGGAGGTATTCTCGTTCAGGGCCCCTCACTATTGGGAAGAAAAGGCAGTTCTGGCAGAAGTTGACGAGTTTGTCTAGAGGAAGCTCCAGTGAACATGGATTTTCAACTAAACTATGGCCTGGATCCCGTTAAGCTTTCAATATTCTCGTGTTTTGCATACCGTATTCACGTTCCACGAATCGCATGTTAGATTCACTTGAAACAAAATGTTGTGATAATGTAAAAAATCACAGACTACAACTACTTATCAATGTATAAACTGCGTACCCATGTGGGTTTCTAGTTAACTATGTCCGAACAATTGGTACTCTAGAGAATAGTATTATAGTAACAAGTGGTACATGTCCAT	2944	0.4154	MSARLRALVLKNRKKVETRVYSTKIILAPLPGYFMLIEGREIFRVVDLVFLLKIMGLQLIFLLIELHLVVITQQFHGHAATKLLHSGDRSHFSIAIPPSKSTSEGHLSIAHSPSDSSSGVPASIALSPSKSIHKAPTIIWTHGFVDSPISHHKHHNSKRKFHNTTPGPTYPVQAPTYSHQGPSVFKSQPPFISPNIKDIHVPAPSPAIRPSHLNVPSSAPRISPLRSSLKKKKTPPPAYTLVLPPPPPNKDCLSMTCSEPLTYMPPGSPCGCVWPLQVKLHIDIAIYKFFPLVSELAKEIAASVLLNHTQVRIVGADAANQQLEKTTVLIDLVPNGVKFDDTTAFLIYKKFWHREILIDASVFGAYEVLYVHYPGLPPSPPSTPLDASGIDDGPNPGHDNNGMMMKPLGVDVPKKKNEGSNGRMIVIIVLSSITAFVVFIGLAWLCLLKCRTYVHEHEPVPDGLISSSSKQSRAAKSLTRGIRPGSGSQSFSSGTITYTGSAKIFTLNDIEKATNNFDSSRILGEGGFGVVYKGILNDGRDVAVKILKRDDQRGGREFLAEVEMLSRLHHRNLVKLIGICIEKQTRCLVYEIVPNGSVESHLHGADKETGPLDWNARMKIALGAAQGLAYLHEDSNPCVIHRDFKASNILLEHDFTPKVSDFGLARTALDEKNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSQPPGQENLVTWVRPLLTIKEGLQMIIDPFVKPKISVDTVVKVAAIASMCVQPEVSQRPFMGEVVQALKLVCSEFEETDYIRSRSYREGLLTDVEGKFSEGSGEREEFSEFQKTLSGYQSGEEKVGLSASELLSTSGQEFESFRRYSRSGPLTIGKKRQFWQKLTSLSRGSSSEHGFSTKLWPGSR	908

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g01015	908	FunFam	receptor-like serine/threonine-protein kinase ALE2	490	592	-	-
	Pste6g01015	908	MobiDBLite	consensus disorder prediction	205	240	-	-
	Pste6g01015	908	ProSitePatterns	Protein kinases ATP-binding region signature.	523	545	IPR017441	GO:0005524
	Pste6g01015	908	FunFam	Receptor-like serine/threonine-protein kinase ALE2	593	807	-	-
	Pste6g01015	908	SUPERFAMILY	Protein kinase-like (PK-like)	496	790	IPR011009	-
	Pste6g01015	908	ProSiteProfiles	Protein kinase domain profile.	517	793	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste6g01015	908	MobiDBLite	consensus disorder prediction	382	402	-	-
	Pste6g01015	908	MobiDBLite	consensus disorder prediction	888	902	-	-
	Pste6g01015	908	Gene3D	Phosphorylase Kinase; domain 1	490	592	-	-
	Pste6g01015	908	Gene3D	Transferase(Phosphotransferase) domain 1	593	810	-	-
	Pste6g01015	908	CDD	STKc_IRAK	523	791	-	-
	Pste6g01015	908	MobiDBLite	consensus disorder prediction	100	121	-	-
	Pste6g01015	908	PANTHER	OS01G0750732 PROTEIN	244	811	-	-
	Pste6g01015	908	MobiDBLite	consensus disorder prediction	888	908	-	-
	Pste6g01015	908	Pfam	Protein tyrosine and serine/threonine kinase	520	790	IPR001245	GO:0004672\|GO:0006468
	Pste6g01015	908	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	639	651	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g01015	Pste-Chr6	4100754	4106841	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g01015	249	908	Receptor kinase-like Gene Family	AT5G56890	59.733	0.0	760

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_Extensin	Pste6g01015		PK_Tyr_Ser-Thr	1.1e-48	CL0016