Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01010 atgtcttcttctcatcccgaaactcatcactggctatacgatgtgttcctcaactttagaggagaagatactcgtaaaaccatcgtttctcatctctataacgccctctctaactctggtatccacactttcatggatgatcaggagcttcccaagggaactgagttgcaaccagaactactgcaagccatagaagggtctcgcatttccatcgtagtcctttctaaaaactatgtccaatctgcatggtgtcttaatgaacttgaaaaaatcatggaatgtcacagaacttatgaacaagtggttctgcctatattctactatgttgatccatcggatgtgcgtcgtcaaaaaggtgcttttggaaaaggtttggaagcatttccgccgaaaagatactccggagaagccatggaatatgtgttgtcaacatggaagagttccctcactaaagttgcaagtttgtctggttgggatgtaaggaattatagaagtgaaggtgacatagtaaaggaagttattaaggaggttttgagaaagctagacaacacattgctatctataacagaatttccagtcggagtggaatcccgtgcgcaacaggtgattggatttattgaaagtcaatcaagcaaagtttgtatggtagggatatggggaatgggaggatcaggaaaaacaaccatggccaaagctatcttcaatcaaattcatcgcaaatttatggataaaagtttcattgaaaatattagagaagtttgtgaaaatgatagcagaggtcacattcatttacaaaaacaacttctattagatgtcctaaaaacaacgatgaatatacatagcaatgcaatggggaaaactatgattgagaaaaggcttgatggaaagaggttacttcttgtacttgatgatgtgactgagtttgagcagttgaaatccctatgtggaaaccgtaaatggattggtcaaggaagtgtaataatcattacaactagagatattcggttgcttaatgtgcttcaagttgactatatttataaaatgaaggaaatggacaaaattgagtcccttgagctttttagttggcatgcctttatggaagcagctccatttgaaaattttgttgaactgtcaagaaatgttgttgcttactgtggaggactacctttagctcttgaagtccttggctcttacttgtaccaaagaacagagaaagagtggaaaagtgtgttgtcaaaactagaaataattcccaatgatcaagttcaagagaaattaagaataagctttgatggtttacatgatcagatggaaaaggatatatttcttgatatatgttgtttctttattggtaaagatagagactatgctacagatatactaaatggttgtggactacatgctgatattggaataacagttctaatagagcgtagcctcattaaattagaaaagaacaacaaacttggagtccatgatttgctacgagatatgggaagagagattattcgtgaaacttcaacaagggaacctgggaagcggagtcgtctgtggtttcgtgaagatgtacttgatgtattaacaaagaatacggggacaaaagctgtagaaggattggctctgaatttggacttcaccagtagagattgctttgaagcttgtgcttttgaggaaatgaagaaattgagactgttgcaacttgatcatgtacaactcactggagattatgcacacatttctaagcagttgagatggatttattggaaaggattttctttaaactacatacctaacaactttcatcttgaagatgtaattgcaattgacttaaaacacagtcatcttagactggtctggaaagaacctcagttgttgaagtggctaaaagttctcaatcttagtcattccaagtacttgacggaaacccctgactttgcaaaactaccaagtcttgaaaagctcattctcaaaggttgtacaagtttgcgcagagtgcaccaatccattggagatctacacaatcttgttttaataaattttaaggattgtgcaagcctaagtaatctcccaaaacagacgtacaagttgaaatctgtgaaaacccttatcctatcaggttgttcaaatattgacaaattggaagaagatatagtgcagatagaatctttgacaactctaattgctaaagatacttctgtgaaacaagttcccttttcaataggattggaaagcaatgagtccgatgatgttttgcttccagaggacaatgatccattttggttgtcgcatgtgggtgagggacactcagtgtatttcagtgtgcctgtggatttttgcatgaagggaatgactttgtgtattgtttatttatcaaactcagaaaacacagcaactgaatgtctaattagtatcttaatggttaattacacaaagtgcaccatccaggtatacaagcgagagacttccatgttctttaatgacgtagattggcaaggcatagtttcaaattttggacctggggacaaggttgagatttttgtgagttttgggtatggattggaggtcaagaagacagctgtgtatttaatgtatgataaatcaactgacatggaaatggagccttctcctggagaggtacctacatatgcagtgtctagtggtgcctcaagtaccattgattctgaagaaggatacatgtgggaaaccaaaagaaagaaaaagaaagagccaaagaaaaatatcttcgaaagattgatgaagaaaattgtaatgtgtaaaatccaagtcgactag 2793 0.0 MSSSHPETHHWLYDVFLNFRGEDTRKTIVSHLYNALSNSGIHTFMDDQELPKGTELQPELLQAIEGSRISIVVLSKNYVQSAWCLNELEKIMECHRTYEQVVLPIFYYVDPSDVRRQKGAFGKGLEAFPPKRYSGEAMEYVLSTWKSSLTKVASLSGWDVRNYRSEGDIVKEVIKEVLRKLDNTLLSITEFPVGVESRAQQVIGFIESQSSKVCMVGIWGMGGSGKTTMAKAIFNQIHRKFMDKSFIENIREVCENDSRGHIHLQKQLLLDVLKTTMNIHSNAMGKTMIEKRLDGKRLLLVLDDVTEFEQLKSLCGNRKWIGQGSVIIITTRDIRLLNVLQVDYIYKMKEMDKIESLELFSWHAFMEAAPFENFVELSRNVVAYCGGLPLALEVLGSYLYQRTEKEWKSVLSKLEIIPNDQVQEKLRISFDGLHDQMEKDIFLDICCFFIGKDRDYATDILNGCGLHADIGITVLIERSLIKLEKNNKLGVHDLLRDMGREIIRETSTREPGKRSRLWFREDVLDVLTKNTGTKAVEGLALNLDFTSRDCFEACAFEEMKKLRLLQLDHVQLTGDYAHISKQLRWIYWKGFSLNYIPNNFHLEDVIAIDLKHSHLRLVWKEPQLLKWLKVLNLSHSKYLTETPDFAKLPSLEKLILKGCTSLRRVHQSIGDLHNLVLINFKDCASLSNLPKQTYKLKSVKTLILSGCSNIDKLEEDIVQIESLTTLIAKDTSVKQVPFSIGLESNESDDVLLPEDNDPFWLSHVGEGHSVYFSVPVDFCMKGMTLCIVYLSNSENTATECLISILMVNYTKCTIQVYKRETSMFFNDVDWQGIVSNFGPGDKVEIFVSFGYGLEVKKTAVYLMYDKSTDMEMEPSPGEVPTYAVSSGASSTIDSEEGYMWETKRKKKKEPKKNIFERLMKKIVMCKIQVD 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01010 930 Gene3D - 185 344 IPR027417 -
Pste6g01010 930 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 445 IPR027417 -
Pste6g01010 930 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 158 IPR035897 -
Pste6g01010 930 SMART till_3 12 155 IPR000157 GO:0007165
Pste6g01010 930 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 183 - -
Pste6g01010 930 Gene3D Ribonuclease Inhibitor 536 739 IPR032675 -
Pste6g01010 930 Gene3D - 7 184 IPR035897 -
Pste6g01010 930 Pfam NB-ARC domain 199 415 IPR002182 GO:0043531
Pste6g01010 930 SUPERFAMILY "Winged helix" DNA-binding domain 421 527 IPR036390 -
Pste6g01010 930 Gene3D - 351 434 IPR042197 -
Pste6g01010 930 ProSiteProfiles TIR domain profile. 11 181 IPR000157 GO:0007165
Pste6g01010 930 PRINTS Disease resistance protein signature 215 230 - -
Pste6g01010 930 PRINTS Disease resistance protein signature 385 399 - -
Pste6g01010 930 PRINTS Disease resistance protein signature 694 710 - -
Pste6g01010 930 PRINTS Disease resistance protein signature 292 306 - -
Pste6g01010 930 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 734 IPR044974 GO:0006952
Pste6g01010 930 SUPERFAMILY L domain-like 541 741 - -
Pste6g01010 930 Pfam TIR domain 13 190 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01010 Pste-Chr6 4076673 4081678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01010 13 740 WRKY Transcription Factor Family AT4G12020 28.267 7.83e-82 288