Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00994 TGACTTGCTAGAGAGAAACAGAAACTAGAAACGCTTTCATGGTCTTTGAGGAGTTGCAGCAAGAAGAGGAAGCAGTGTGTTGGTGAAAACTGAAAGCGTCATGAGCCGCTACGATAGCCGCTCCGGTGACCCCACTTCCTACCGTGACCGGAGGAGTGATTCTGGGCTAGGTGCATCTACAGGGTTTGGTGGTTCTGTACAACACTCTTCATCAAACAAGAGGGATTATGATGATGGTGGATCACCAAAGAGGAACCTCACTTTGGATGGTTTACCTCATTTTGAGAAAAACTTCTACATTGAGTCGCCAGCAGTAAGGGAAATGACAGATGCTGAGGTTAATGAGTACCGGCAGCGGAGGGAAATAACTGTTGAAGGTCGAGATATACCCAAACCTGTAAAGACCTTCCGTGATGCTGGCTTTCCTGAATATGTAATGCAAGAAATTTCAAAGGCTGGCTTTACTGAACCTACACCCATTCAATCTCAAGGTTGGCCAATGGCATTGAAGGGGCGTGATCTGATAGGAATTGCAGAAACAGGATCTGGGAAGACACTTGCTTACTTGTTGCCTGCCATTGTGCATGTTAATGCTCAGCCAATTTTAGATCCTGGAGATGGACCAATTGTGTTAGTTTTGGCTCCAACTCGTGAACTCGCTGTCCAAATACAACAAGAGGCTACTAAATTTGGTGCATCATCTAAGATTAAGAGTACATGCATCTATGGTGGGGTTCCAAAGGGACCTCAAGTGCGTGATCTCCAGAAAGGCGTCGAAATTGTAATTGCTACTCCGGGAAGGTTAATTGATATGCTCGAGTCTAATCATACCAACTTGCAAAGGGTCACATACCTTGTATTGGATGAAGCTGATAGGATGTTGGATATGGGTTTTGATCCTCAGCTACGGAAGATTGTCTCTCAGATCCGTCCAGACCGTCAAACTTTGTATTGGAGTGCTACCTGGCCAAAGGAGGTTGAACAATTGGCACGGAAGTTCCTTTATAACCCATACAAAGTAATTATAGGCTCCCCAGATTTAAAAGCTAACCATGCAATACAGCAATATGTTGACATTGTTTCAGAAAAGCAGAAATATGACAAATTGGTGAAGTTGCTGGAGGACATCATGGATGGCAGCCGAATACTGATATTCATGGATACTAAAAAAGGATGTGATCAGATCACCAGGCAACTCCGCATGGATGGATGGCCGGCACTTTCAATTCATGGAGACAAAAGTCAAGCAGAAAGAGATTGGGTGCTCTCAGAATTTAAGTCTGGCAAAAGTCCTATTATGACTGCAACAGATGTTGCAGCCCGTGGTTTAGGTGCAAAAACTTTTGCTTAA 1351 0.4419 MSRYDSRSGDPTSYRDRRSDSGLGASTGFGGSVQHSSSNKRDYDDGGSPKRNLTLDGLPHFEKNFYIESPAVREMTDAEVNEYRQRREITVEGRDIPKPVKTFRDAGFPEYVMQEISKAGFTEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLQRVTYLVLDEADRMLDMGFDPQLRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYNPYKVIIGSPDLKANHAIQQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLGAKTFA 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00994 416 Gene3D - 310 413 IPR027417 -
Pste6g00994 416 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 132 307 IPR014001 -
Pste6g00994 416 MobiDBLite consensus disorder prediction 1 17 - -
Pste6g00994 416 SMART ultradead3 120 323 IPR014001 -
Pste6g00994 416 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 101 129 IPR014014 GO:0003724
Pste6g00994 416 Pfam Helicase conserved C-terminal domain 332 410 IPR001650 -
Pste6g00994 416 CDD DEADc_DDX5_DDX17 112 307 - -
Pste6g00994 416 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 410 IPR027417 -
Pste6g00994 416 Gene3D - 64 309 IPR027417 -
Pste6g00994 416 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 76 412 - -
Pste6g00994 416 MobiDBLite consensus disorder prediction 1 56 - -
Pste6g00994 416 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 309 IPR027417 -
Pste6g00994 416 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 253 261 IPR000629 -
Pste6g00994 416 CDD SF2_C_DEAD 320 410 - -
Pste6g00994 416 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 335 416 IPR001650 -
Pste6g00994 416 FunFam probable ATP-dependent RNA helicase DDX17 63 310 - -
Pste6g00994 416 Pfam DEAD/DEAH box helicase 125 296 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00994 Pste-Chr6 3987280 3992448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00994 88 413 Eukaryotic Initiation Factors Gene Family AT3G19760 32.110 2.83e-59 197