Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00989 ATTAAATGTAAAGGCCAAATTAAAACAATAGTATATCAACATTTAATTTACATAACTTCGGTTTATTAGACGAAAATTGGTTGTTTGTAATTTTATAAAAAGAAATTGTTTATTTATGTGGTAGAGAAGATGGAGCAATTGGTGCACGCATCTGTTAAGACGATGATACACTTTTTTGTACGGAAATGGAGCGTTTATCTCTGAGATCGAGCTTGACCTTTGGAGAGACGCTGTGTGCTGTGTTCATCCCGCTCATTGGAATGATCGAAGCTTTGGTTTTCAGCTTCGCTGATTGCTTCCGTTTTCGTTCTCCCTCCAACAACAAACATTCTTCTACCTTTCAACAGATTCTCACCCTCGCTCAGGATTCTCCATTTAGTGTTAATGAAATCGAGGCGTTGCATGAGTTGTTCAAGAAGTTGAGCAGTTCCATCATCGATGATGGCCTCATCCACAAGGAAGAGCTCACGTTGGCACTGTTAAAGACAACAACTGGCGAGAATCTCTTCCTTGACAGGGTGTTTGATCTCTTCGATGAAAAAAAAAATGGCGTTATAGAATTTGAGGAGTTTGTCCATGCTCTCAGTATCTTTCATCCTTGTACTCCTGTGGAAAAGAAAATTGATTTTGCATTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGCGAGAAGAAGTTATGCAAATGGTTGTTGCCATTCTGGCAGAATGTGGCATGGATCTGGAAGAGGACGCCCTTGATTCCATTATTGATAAGACATTTCAAGATGCTGATGCTGACAAAGATGATAAAATAAGCAAAGAAGAATGGAAGGCATTTGTCATTCGGCACCCAACACTTTTGAAGCACATGACTCTTCCTCATCTGAAGCACATCACCACACTGTTTACCAGTTTCATATTCAATACCGAAGTTGATGATTCTCACTGGAATATTAATGGCAATCATAAACATTGAGGAGTTGAAGCTTCTGTTGCTCCTGCGGTTGCTGTTCTTAGAAGTAGATTCTGCCAATTCCACTGGCACTCTCCAATGCTGACTCCATGAATCCAACGAGAGAATTCATGGAAGTGGATCAAACCACCAAAGAGAGTGAAAAATCTTATCCAAACCAGTAAAGTGCTTAAATTGAATCAAAATACTGTTTGGTTTGATCTGCTTACTGTACAGCTCCTTCTAATGCGATGTACAAAATTTATTTGCACGAGAAAACATTTGAAATATTTAAAATGTGTCTATGATCATAATTAGAAGGTTTAAATACTTATTCGTTCTATAT 1284 0.3816 MERLSLRSSLTFGETLCAVFIPLIGMIEALVFSFADCFRFRSPSNNKHSSTFQQILTLAQDSPFSVNEIEALHELFKKLSSSIIDDGLIHKEELTLALLKTTTGENLFLDRVFDLFDEKKNGVIEFEEFVHALSIFHPCTPVEKKIDFAFRLYDLRQTGYIEREEVMQMVVAILAECGMDLEEDALDSIIDKTFQDADADKDDKISKEEWKAFVIRHPTLLKHMTLPHLKHITTLFTSFIFNTEVDDSHWNINGNHKH 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00989 258 PANTHER CALCINEURIN B 47 248 IPR045198 GO:0005509|GO:0019722|GO:0019900
Pste6g00989 258 ProSitePatterns EF-hand calcium-binding domain. 198 210 IPR018247 -
Pste6g00989 258 SMART efh_1 189 217 IPR002048 GO:0005509
Pste6g00989 258 SMART efh_1 145 173 IPR002048 GO:0005509
Pste6g00989 258 SMART efh_1 108 136 IPR002048 GO:0005509
Pste6g00989 258 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Pste6g00989 258 SUPERFAMILY EF-hand 58 239 IPR011992 -
Pste6g00989 258 CDD EFh 109 170 IPR002048 GO:0005509
Pste6g00989 258 Gene3D - 56 248 - -
Pste6g00989 258 PRINTS Recoverin family signature 112 133 - -
Pste6g00989 258 PRINTS Recoverin family signature 205 225 - -
Pste6g00989 258 PRINTS Recoverin family signature 159 177 - -
Pste6g00989 258 Pfam EF hand 109 134 IPR002048 GO:0005509
Pste6g00989 258 Pfam EF-hand domain pair 144 213 IPR002048 GO:0005509
Pste6g00989 258 FunFam calcineurin B-like protein 3 54 247 - -
Pste6g00989 258 ProSiteProfiles EF-hand calcium-binding domain profile. 141 176 IPR002048 GO:0005509
Pste6g00989 258 ProSiteProfiles EF-hand calcium-binding domain profile. 185 220 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00989 Pste-Chr6 3964717 3968222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00989 58 248 EF-hand Containing Proteins AT5G55990 62.304 1.91e-84 250