LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g00979	CGGTAATTGAATTCTTGTGTTGGCATAAATAAATGCACATTTTTAATGTTGTCATCTTTAATCAATTTTGTTTATCGTTCTGGTTGTTGTTAAACTTGACTTTTCTTTAATCTGCAAAGCATAAGAAGCAAGAGAGTGGAGTATAAAAAATTGGAAGGGAAGTGGGGTGTGGAAGGAGGATCATCAATGGAGGATTATGAGTCGTTGATTGCAACCACTGACGTGGAGCTTCTGAAGCGAGCCTGGCGCAACGAGAAAGCCGCCCCTGAGATTCTCCGCTACCAATCTCATTTGATTTCCCGCGTCAAACAACAGATTCAACTCATGGAAGAAACTGTTGAGGAGAAATCCAGTGCCGGTACTAGTGATCCTCTTTCGGTCTCTCTCTATCAGATGGACTTGGATAGAACACTCTTCCTGTTAAGATCCTATTTCAGAATCCGCATCCAGAAGATTGAGAAGTACATGTTCCACATCTTTAAAACTGAAGAACTTTGGAACAGGCTATCTAAGTATGAAAAAGATTTTGCCACAATGTATACAGATGACCTCAAACAACATCTTGAGGATACTGTTCTATCAAAGTTGCCTGCAAATTACCGCTCTGTTCTGAGGCAATCTGAGATAAGTGAAGAGGATGACATGGTCCCAGAACCACAGCTAGACACATTTGTTTTGTGTAGAAGTAAAGAGTATCTCACGGGCATTCAACTCGAAGATGGACCTGTTGATGACAGGCAATTCTCTTATTCTTGGATTAATCTATTCTGCTCCTTTTTGAAAAAGGTTAAAATTAGTTCAATTCATTATTCTTGCAGGTCGAAGCTGTTTGAGATGGAGCCAGGTGTTCTGCACTTCATATGTTATAAATCAATAAAAGCGCTTGTAGAGAGTGGCAAAATTGATCTACTATGA	915	0.3978	MEDYESLIATTDVELLKRAWRNEKAAPEILRYQSHLISRVKQQIQLMEETVEEKSSAGTSDPLSVSLYQMDLDRTLFLLRSYFRIRIQKIEKYMFHIFKTEELWNRLSKYEKDFATMYTDDLKQHLEDTVLSKLPANYRSVLRQSEISEEDDMVPEPQLDTFVLCRSKEYLTGIQLEDGPVDDRQFSYSWINLFCSFLKKVKISSIHYSCRSKLFEMEPGVLHFICYKSIKALVESGKIDLL	242

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g00979	242	PIRSF	GINS_Sld5	1	242	IPR008591	GO:0006261
	Pste6g00979	242	PANTHER	SLD5 PROTEIN	3	242	IPR008591	GO:0006261
	Pste6g00979	242	FunFam	DNA replication complex GINS protein SLD5	1	188	-	-
	Pste6g00979	242	Gene3D	-	1	232	-	-
	Pste6g00979	242	Coils	Coil	37	57	-	-
	Pste6g00979	242	Pfam	DNA replication complex GINS protein SLD5 C-terminus	194	242	IPR031633	-
	Pste6g00979	242	Pfam	GINS complex protein	54	112	IPR021151	-
	Pste6g00979	242	CDD	GINS_A_Sld5	12	131	IPR038749	-
	Pste6g00979	242	SUPERFAMILY	GINS helical bundle-like	9	141	IPR036224	-
	Pste6g00979	242	SUPERFAMILY	PriA/YqbF domain	194	242	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g00979	Pste-Chr6	3915589	3918235	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g00979	3	162	Core DNA Replication Machinery Family	AT5G49010	62.500	3.33e-63	194

Showing 1 to 1 of 1 entries