Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00978 atggcatcgtctttctcctccaagacccggtggatctacgagattgagaagggaacagagttgagaccagaactagtgcgagccatacaagggtctcgaatatctgtcgtggttttttccaccaactacacttcatcaaggtggtgtcttgatgagttagtcaaaatcatggaatgccacagaactcaaggccagttggttttgctcatattttacaatgttgatccatcagatataaatcatcacaagggtagttttggagaaggcttggaagcattagcacaaaaatgtttactagaaggaaagcatgatgtcttgaggagttggaagagtgcactcgaggaggctgcaaatttggctggtgtggtgcccttcgtttacaggtatattcatactcagcacggcggcacaaagatgcgaccacggcggtgtgagacgcaagtgtggtcgagatgcaagcgcgacgatgtgagtgcgatagtgcgagatgcgagcgcaatggtgcacgaagcgagcacggtggtgcgagacgcaaccgtggcggtgcaagatgcgagtgtgacattgcgagaccgcaataatgcgagacgtgagcacgacaatgcggcgagtggcagcctgagtagcagaagggcaaatgacaaaagcaaatggcgaacaacgagcaagagaaaattggaaacacaaggagcacaagagactataggaaatacaagaagagcggttgcagttgacattcatctagtgaactacatttttgagtacatttatgaaagactagacatcgatgtattctccatagcagaattcccaattcgattggaatctcgtgtgcaagaagtgattcaccttattgatggtaaaaaattaggcaaagtttgcgttgtagggatatggggaatgggaggtttgggtaaaacaactatggccaaagccatctacaataaaatttatcagagatttatgcgtacaagtttcattgaaaatattagagaagtttgcgaaaaggacagtaaagcatgtacgcgtttgcaagaacaacttcttttagatctcttgaaaacaaaggtcaaggtacatagtgttgtgaagggaacaaatatgatcgagaaaagtcttggtggaaaaagagctcttgttgtacttgatgatgtgaccaagtttgaacaactgaaagccccatgtgcagatcttaaatggattggtctaggaagttcccttgagctcttcagttggcatgcatttaggcaagtaagtccaagagaagacttcattaaactctcaatggacgtagttgcttattgtggaggactgccattggcccttgaggtacttggattttacttatctcacaggatgaaagaagaatggcagagtgtattgtcaaagctaaagaaaattcccaataatcaagtacaagagaagctgaaaataagctatgatggtttagattgtgaggaaaagaatatatttcttgacatatgctttttcttcattggcaaggactgtgctgatgttacaaagatactcaaaggctgtgactttcatcctgaaattggaataacaatactagttgaaaggagtctcataaagcttgatatgaatgacaaactcaaaatgcatggtttactacgtgacatgggaagagaaattgttcgccaaagttctccaaaggagcctgagaagcgaagtcgattgtgggttcaccaggaaatacttgatgtattgacagaacacagtgtaataataagaactttctctacatttacttttggaaaccatcgaccaccctccatgattttatcatcatcacaaatctaa 1821 0.0 MASSFSSKTRWIYEIEKGTELRPELVRAIQGSRISVVVFSTNYTSSRWCLDELVKIMECHRTQGQLVLLIFYNVDPSDINHHKGSFGEGLEALAQKCLLEGKHDVLRSWKSALEEAANLAGVVPFVYRYIHTQHGGTKMRPRRCETQVWSRCKRDDVSAIVRDASAMVHEASTVVRDATVAVQDASVTLRDRNNARREHDNAASGSLSSRRANDKSKWRTTSKRKLETQGAQETIGNTRRAVAVDIHLVNYIFEYIYERLDIDVFSIAEFPIRLESRVQEVIHLIDGKKLGKVCVVGIWGMGGLGKTTMAKAIYNKIYQRFMRTSFIENIREVCEKDSKACTRLQEQLLLDLLKTKVKVHSVVKGTNMIEKSLGGKRALVVLDDVTKFEQLKAPCADLKWIGLGSSLELFSWHAFRQVSPREDFIKLSMDVVAYCGGLPLALEVLGFYLSHRMKEEWQSVLSKLKKIPNNQVQEKLKISYDGLDCEEKNIFLDICFFFIGKDCADVTKILKGCDFHPEIGITILVERSLIKLDMNDKLKMHGLLRDMGREIVRQSSPKEPEKRSRLWVHQEILDVLTEHSVIIRTFSTFTFGNHRPPSMILSSSQI 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00978 606 Gene3D - 406 484 IPR042197 -
Pste6g00978 606 SUPERFAMILY "Winged helix" DNA-binding domain 471 576 IPR036390 -
Pste6g00978 606 PRINTS Disease resistance protein signature 435 449 - -
Pste6g00978 606 PRINTS Disease resistance protein signature 295 310 - -
Pste6g00978 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 494 IPR027417 -
Pste6g00978 606 ProSiteProfiles TIR domain profile. 1 156 IPR000157 GO:0007165
Pste6g00978 606 Gene3D - 6 173 IPR035897 -
Pste6g00978 606 Pfam NB-ARC domain 277 392 IPR002182 GO:0043531
Pste6g00978 606 Pfam NB-ARC domain 406 475 IPR002182 GO:0043531
Pste6g00978 606 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 121 IPR035897 -
Pste6g00978 606 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 576 IPR044974 GO:0006952
Pste6g00978 606 Pfam TIR domain 14 117 IPR000157 GO:0007165
Pste6g00978 606 Gene3D - 263 405 IPR027417 -
Pste6g00978 606 MobiDBLite consensus disorder prediction 212 226 - -
Pste6g00978 606 MobiDBLite consensus disorder prediction 190 232 - -
Pste6g00978 606 SMART till_3 4 119 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00978 Pste-Chr6 3912631 3917223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00978 272 567 WRKY Transcription Factor Family AT5G45050 32.722 3.86e-42 161