Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00974 atggacttggcatcttcttcatcctcttcctttttcagattcaaacccgaatggattcacgatgtgtttatcaatttttggggagaagaaattagtaggaatttcgtttctcatctccattctgctcttttagaatctgaagtcaaaactttcctcgactacaacggcatgcaacaggaagagcttacacgagcaatagaagggtctcagatagcaatagttgttttcaacaaaagctttactgaatctggttggtgtcttgaagtacttacaaagatcattgaatgccaccaatcttgtggcccaaaagttatgtctttattttacgaaatagatccatccactgtgcgtcatcagaccggtgattttggaaaggctttgaaagcaactgctaaaaaaatatttccagaaaaaaatctagaatctgggttgttgagatggagccgtgcactcaccaaagctgcaaatttacctggttggactgacaggttcaggaatgatgctaaattagtagacgaaatcgttgactatgtgcttgttaatctagactacggcttgtccattactagatttcctgttggattagagtgccatgtagaaaaagtggttggaattattaaaaatcaaccccccaaagtttgtatcatagggatatgggggatgggagggtcaggtaaaactactgtggccaaagccatttacaatcgaattcatcggtcgttcatgtgtaagagtttcattgcagatatcagggaaagttgtcaaactgatacaagagggaatgttcatttacaagaacaacttctttctgatctcttgaaaacaaaggtggtaatacatagcgtaaaaatgggaatagatatgataaaaaaaaggcttggtggaaaaatagcactcattgtacttgatgatgtgaatgaatttggccaattaggtgacctatgtaggaatcgtgaatggtttagttatggaactgtcataatcattacaacaagagatgtgcatctgttgaaacaccttcaagttgattatgtttataaaatggaagaaatggatgaaattgagtctcttgagttttttagttggcatgcttttggagaagctaaaccaagagaagactttaatgaacttgcaagaaatgtagttgcttattgtggaggattaccactagctcttcaagtccttggttcttgtttatttgcgcaaccaaagaaagactgggaaagtttattgtcagagctaaaaataactcctaatgatgacgttcaagagaaattaagaataagctttgatgatataactgataccatggaaaaggatatatttcttgacatatgttgtttctttgttggtaaagatagagcctatgttacgaagatactagagggatgtggactgcatgccgatattggaatacatactcttatagatcgcagccttataaaacttgaaaagaacaacaaacttggaatgcatcctttgctacaagaaatgggaaaagagatgattcgtgaaaatttaagaaaggaacctgggaagcatagtcgattgtgttttcatgaggatgtagttgaagtattgacaaagaaaactgggacaaatgctgttgagggattggttttgaagttggatttaaccaaaagacatgacttccaagctcatgcttttaaaggaatgatgaaattgagactattgcgactggattatgtacaacttactggagattatcagtttcttcccaaggaactaagatggatatactggaaaggatttcctctaaaatacatgcctgaaaacttttatttgagacatgtaattgcaattgaattgaaacacagtaatcttagacaggtttggaagcaaccccaggttctgttgtgtctcaaaatcctcaatcttagtcactctaagtacttaacagaaactccagacttttctaatctaccaaatcttgaaaagcttattttcaaagattgtccaagtttgcacaaggaattagcaatcagtgagtctagtgatatttctctcccaggtgacaatcacccttattggttggcccatatgggtgagggacattcggtgtatttcattgtgcctgaagattgccacatgaagggaataattttgtgtgttgtttatctatcaatctccgaaaagacagcaactgagtgtcttactagtgtcttaatggttaattatacaaagtgcacaatccagatatgcaaacgtgacactgtgaattcctttaatgatgtagattgggagggcataatgtcacacgtggaatctggagacaagttgggaatttttgtgatttttggacataaattggtggtcaagaagacagctgtctatctaatatgtgacaaatcaatcgacagaagaacagtggcttctccccaaacaaaaaatgagccaaagaaaaatgcctttgtaagattcacaaagaaatttgtaacaagtaagactcaagagcaatag 2481 0.0 MDLASSSSSSFFRFKPEWIHDVFINFWGEEISRNFVSHLHSALLESEVKTFLDYNGMQQEELTRAIEGSQIAIVVFNKSFTESGWCLEVLTKIIECHQSCGPKVMSLFYEIDPSTVRHQTGDFGKALKATAKKIFPEKNLESGLLRWSRALTKAANLPGWTDRFRNDAKLVDEIVDYVLVNLDYGLSITRFPVGLECHVEKVVGIIKNQPPKVCIIGIWGMGGSGKTTVAKAIYNRIHRSFMCKSFIADIRESCQTDTRGNVHLQEQLLSDLLKTKVVIHSVKMGIDMIKKRLGGKIALIVLDDVNEFGQLGDLCRNREWFSYGTVIIITTRDVHLLKHLQVDYVYKMEEMDEIESLEFFSWHAFGEAKPREDFNELARNVVAYCGGLPLALQVLGSCLFAQPKKDWESLLSELKITPNDDVQEKLRISFDDITDTMEKDIFLDICCFFVGKDRAYVTKILEGCGLHADIGIHTLIDRSLIKLEKNNKLGMHPLLQEMGKEMIRENLRKEPGKHSRLCFHEDVVEVLTKKTGTNAVEGLVLKLDLTKRHDFQAHAFKGMMKLRLLRLDYVQLTGDYQFLPKELRWIYWKGFPLKYMPENFYLRHVIAIELKHSNLRQVWKQPQVLLCLKILNLSHSKYLTETPDFSNLPNLEKLIFKDCPSLHKELAISESSDISLPGDNHPYWLAHMGEGHSVYFIVPEDCHMKGIILCVVYLSISEKTATECLTSVLMVNYTKCTIQICKRDTVNSFNDVDWEGIMSHVESGDKLGIFVIFGHKLVVKKTAVYLICDKSIDRRTVASPQTKNEPKKNAFVRFTKKFVTSKTQEQ 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00974 826 SUPERFAMILY "Winged helix" DNA-binding domain 421 527 IPR036390 -
Pste6g00974 826 SMART till_3 19 157 IPR000157 GO:0007165
Pste6g00974 826 Gene3D - 15 186 IPR035897 -
Pste6g00974 826 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 737 IPR044974 GO:0006952
Pste6g00974 826 Pfam TIR domain 20 178 IPR000157 GO:0007165
Pste6g00974 826 ProSiteProfiles TIR domain profile. 18 182 IPR000157 GO:0007165
Pste6g00974 826 Gene3D - 351 434 IPR042197 -
Pste6g00974 826 PRINTS Disease resistance protein signature 292 306 - -
Pste6g00974 826 PRINTS Disease resistance protein signature 623 639 - -
Pste6g00974 826 PRINTS Disease resistance protein signature 385 399 - -
Pste6g00974 826 PRINTS Disease resistance protein signature 215 230 - -
Pste6g00974 826 Pfam NB-ARC domain 196 424 IPR002182 GO:0043531
Pste6g00974 826 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 445 IPR027417 -
Pste6g00974 826 Gene3D - 187 345 IPR027417 -
Pste6g00974 826 SUPERFAMILY L domain-like 541 664 - -
Pste6g00974 826 Gene3D Ribonuclease Inhibitor 522 686 IPR032675 -
Pste6g00974 826 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 160 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00974 Pste-Chr6 3882101 3889394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00974 11 659 WRKY Transcription Factor Family AT4G12020 27.164 1.31e-69 249