Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00968 atggcttcttcatcttctaacacctaccacatccacgacgtgttcttgagtttcagaggagaagacacacgtaagactttcgtgtctcatctctatgctgcactctcaaacgcaggaatcagcactttcattgatgacaagcttcacaagggaagtgagttaggagcagaactagtgagagaaataaaagggtctcgaatttccattgttgttttgtccattaactatgcttcttctaagtggtgtctcaatgagttggtcaaaatcatggagtgccgtacaacttatgggcaggaggttatgcctgtattttacaatgtagatccatcggatgttcgaaatcaaacgggcgattttggacaaggctttcataaaatcgtatctgaagattcttcaacagtccaaaaatctttgtcagaaaaatcagccacactgttacagagttggaggaaagtacttaagcaagctgcaaatttggcgggttgggatgcaaggaattggaggagtgaaagtgaactagtgaggcaaattgtgatggacatttgtggaaaactagacatcggattaatgtctattcccaagttcacagttggattagaatctcgtgtgcaagaagtgattcaatctattaatgctctatcaggcagaggtcgtgttgtagggatatggggaatgggtggattgggtaaaacaaccattgccaaagtggtctacaaccagattcgtttacggttcaagcatagtagtttcattgaaaatattagagaagtttgtgaaaaggataataaagggtatgttaatttgcaagaacagcttctttttgatctcctaggagatacatttgatagggtacagagcactgccttaggcacaactatgattgagaatagacttaatggaataggtgctcttgttgttcttgatgatgtgactgactttaagcaattgaaagccttatctataaatggtagatggattgctcgaagaggtgtagtaatcattacaactagagatctacgcgtgcttaatttgcttaaagctgatcatacagtctatatttgtacagtaaaggaaatggatgaaaatgagtcccttgaacttttcagttggcatgcttttagacaaacacatccaagagaagacttgattaaactctcaaaagatatagttgcttactgtggagggctgccactagctcttgaaacccttggatcttgcttgtttgatagggtgaaagaagagtgggaaagtgtattgttaaaactaaagaaaattcccgatgctacagtacatgataagctgagaataagctatgattgtttagattctgaggaaaagaatatattccttgacatatgttttttctttatcggcaaggacagagctgatgttacaaagatactgaagggttctaactttagtcctgaaattggaatcacaatcctggttgaaaggagccttgtaaagattgaaaagaacaacaagctcaaaatgcatgatttgctacgtgacatgggaagagaaattgttcgtcaaagttctccagataaacctgagaggcgtagccgattgtgggttcaacaagaagtacttgatgtgttgtcagaacatactggaactgaagcaattgaaggcttcactttgaagttacaaagagctagtcgacttcaattcaatactaaagcatttcagcatatgaagaaattgagacttttgaaacttgatcatgtacaacttgttggagatcacgtgtatcttaacaaaaacctacgatgggtttgttggcatgaatttcctttagcacacattccagacgacttaaatcaaggaaacgtaatttctattgaactaaaatacagtaatattagacaagtatgggagcagcctcagttgctggagaagctaatgatcctcaatcttagtcattcgaggaacttgatgcatactcctaatttttcaaaactaccaaatctttcaaagctgattctcaaagattgtccacgtttgactaagattgacaagttggaggaagatatagagcagatggagtccttgactacactaattgctaaagatacatctgtaaaagaaatgcctcgttcaatatgccactcaaagtttcagctcactgaaaatttaagaaaagttatggatgacttatgtgatgtaaaatttgcagaattggaaagagcatcatgtacatcacaagtttttgaaaatgacttgaaatcttattcgattggaatgggaagttgcgaccaactcatcaatgtgcttagccagagcttatcagagggcttgagaaccaatgattctagtgatttttcccttccgggtgacaataagccttactggtcagcttttgttagtcagggagattcagtacgttttcaattggctgaggatactgatagttgcatgaagggaatgactttgtgtgtagtttattcatcaacctctaaaaacatggaagttgaatgtttgactgctcttgggcatggattgactgtcataaagacagctgtttatctaatatatcatcgttcaactgctgtggaaatgcagccatcacctaatgtgaatgtgcagccatcacataatttgataatggagccatcactgaaagtgaacatgcaaccatcacctgatgtgatgatggagccattacctaaagtgaacatgccaccatcacctagagtgaatatacagccatcacctagagtgaatgaggaacaatcacctgatgtgataatggagtcatatcctaaacttattgtgcatccatcacctatcatcacaatggagccatctcttaaagtgaacgtggaagctgcacctaaagccccaatggagccatcacagaaagtgaatgtgcagtcatcacctaatatgttaatgcagccatcatctaacatgaatgcagatccatcacgcaatggtaaaatggagccattaccaaacatgaaatcagatccatcgacaacgcagaagaaaagttttttggcaagacttacaaagagaatgagagaatgttcatgcatgagccaaaaatga 3054 0.0 MASSSSNTYHIHDVFLSFRGEDTRKTFVSHLYAALSNAGISTFIDDKLHKGSELGAELVREIKGSRISIVVLSINYASSKWCLNELVKIMECRTTYGQEVMPVFYNVDPSDVRNQTGDFGQGFHKIVSEDSSTVQKSLSEKSATLLQSWRKVLKQAANLAGWDARNWRSESELVRQIVMDICGKLDIGLMSIPKFTVGLESRVQEVIQSINALSGRGRVVGIWGMGGLGKTTIAKVVYNQIRLRFKHSSFIENIREVCEKDNKGYVNLQEQLLFDLLGDTFDRVQSTALGTTMIENRLNGIGALVVLDDVTDFKQLKALSINGRWIARRGVVIITTRDLRVLNLLKADHTVYICTVKEMDENESLELFSWHAFRQTHPREDLIKLSKDIVAYCGGLPLALETLGSCLFDRVKEEWESVLLKLKKIPDATVHDKLRISYDCLDSEEKNIFLDICFFFIGKDRADVTKILKGSNFSPEIGITILVERSLVKIEKNNKLKMHDLLRDMGREIVRQSSPDKPERRSRLWVQQEVLDVLSEHTGTEAIEGFTLKLQRASRLQFNTKAFQHMKKLRLLKLDHVQLVGDHVYLNKNLRWVCWHEFPLAHIPDDLNQGNVISIELKYSNIRQVWEQPQLLEKLMILNLSHSRNLMHTPNFSKLPNLSKLILKDCPRLTKIDKLEEDIEQMESLTTLIAKDTSVKEMPRSICHSKFQLTENLRKVMDDLCDVKFAELERASCTSQVFENDLKSYSIGMGSCDQLINVLSQSLSEGLRTNDSSDFSLPGDNKPYWSAFVSQGDSVRFQLAEDTDSCMKGMTLCVVYSSTSKNMEVECLTALGHGLTVIKTAVYLIYHRSTAVEMQPSPNVNVQPSHNLIMEPSLKVNMQPSPDVMMEPLPKVNMPPSPRVNIQPSPRVNEEQSPDVIMESYPKLIVHPSPIITMEPSLKVNVEAAPKAPMEPSQKVNVQSSPNMLMQPSSNMNADPSRNGKMEPLPNMKSDPSTTQKKSFLARLTKRMRECSCMSQK 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00968 1017 PRINTS Disease resistance protein signature 630 646 - -
Pste6g00968 1017 PRINTS Disease resistance protein signature 219 234 - -
Pste6g00968 1017 PRINTS Disease resistance protein signature 297 311 - -
Pste6g00968 1017 PRINTS Disease resistance protein signature 393 407 - -
Pste6g00968 1017 ProSiteProfiles TIR domain profile. 10 185 IPR000157 GO:0007165
Pste6g00968 1017 MobiDBLite consensus disorder prediction 889 912 - -
Pste6g00968 1017 Pfam TIR domain 12 185 IPR000157 GO:0007165
Pste6g00968 1017 Gene3D - 187 352 IPR027417 -
Pste6g00968 1017 Pfam NB-ARC domain 201 424 IPR002182 GO:0043531
Pste6g00968 1017 Gene3D Ribonuclease Inhibitor 535 761 IPR032675 -
Pste6g00968 1017 Gene3D - 358 442 IPR042197 -
Pste6g00968 1017 SUPERFAMILY "Winged helix" DNA-binding domain 430 534 IPR036390 -
Pste6g00968 1017 SMART till_3 11 159 IPR000157 GO:0007165
Pste6g00968 1017 MobiDBLite consensus disorder prediction 953 977 - -
Pste6g00968 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 452 IPR027417 -
Pste6g00968 1017 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 740 IPR044974 GO:0006952
Pste6g00968 1017 MobiDBLite consensus disorder prediction 946 1001 - -
Pste6g00968 1017 Gene3D - 9 186 IPR035897 -
Pste6g00968 1017 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 187 - -
Pste6g00968 1017 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 162 IPR035897 -
Pste6g00968 1017 SUPERFAMILY L domain-like 516 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00968 Pste-Chr6 3855922 3865166 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00968 197 743 WRKY Transcription Factor Family AT5G45050 31.271 7.97e-67 243