Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00962 GATGATTTCTCGTGGTTTTGTCTGAAAGATCTTGATTTCACTTCTTTATGTTCTCAAAGAATCACAATAGACGCTATAAATCTACTTTTTGTATGTGTCTTCTACACATTTATGATTGTCTGTCTCATCAGAAGAAATTCTATACATGGTAGTTTCAGAAAAAGCTGGCTTTTTCTTATTACCTCTATCTGGTGTGCTGTTATTAGCATTGTGTATTACATTATTGGGCTGTGCCATCTTATAGCTAAAACTAATAACTCTAAGGTTAAGCAGCTTACCTGCTTATCTTGCTTTGTAAGAGGATTTGTTTGGACTTCTTTGGCAGTTTCCTTCATTGTTAAGAGACACAAATGGACAAACATTTTGAACTGTGTGTGGTGGGGATCTTCCTGTGCACTTGTTTCAGCTCTCAATATTCAAATTTTGTTCAAAAACCATGCAATAGAATTTTTTTATATGGTACAATGGCTTGTACACTTCCTTTTTCTCTTCTGCGTCTTCCAAAATATTGGTTACTTTGTGGCTCAAAGGGCGCCGGAAACATTATCTGAGCCACTATTAGCTCAGGAAGTTGACACTAAACAAACGGGGCTAGGCCGTGCTAACTTTCTCAGCAAGTTGACTTTCTCTTGGGTTAACTCCTTACTCAATCTGGGTTACTCAAAGCCACTGGCTCTTGAAGACATCCCTCTCCTTCTTTCTGATGATGAAGCAGACTTGGCTTACCAAAACTTTAAGCATGCATGGGAATCCCTTTTAACAGAGAGGAGAAAGAACAATACCCAAAACATGGTTCTTTGGGCTGTTGTTAGAACTCACTTAGAAGACAACATATTAATAGCTTTTTACGCTCTACTCAGAACCATTGCCATTACCGTTTCGCCTTTAATACTCTACGCTTTTGTAAACTACTCAAATAGCAAGGATGCAAAGGATACTGGTCTCAAAGAAGGTTTTTCCATAGTGGGTTTTCTTATTCTCTCCAAAGTGGTTGAATCTGTGTCCCAGAGACATTGGTTTTTTGATTCCAGGAGGTCAGGATTGAAGATGAGATCAGCTCTGATGGTGGCAGTGTATAAAAAGCAGCTAAAGCTTTCAAGCTCCGCAAGGAGAAAGCACTCAACAGGTGAAATTTTGAATTACATTGCAGTCGATGCGTATCGCATGGGAGAATTTCCATGGTGGTTTCATACGTCATGGACTTCAGCAGTACAACTTGTTTTATCTATTGGTGTCCTTTTTGGTGTTGTGGGTGTTGGTGCTCTTCCTGGTTTAGTCCCACTCTTTATATGTGGACTTCTCAATGTACCATTTGCCAAGATCCTACAAAGTTGTCAATCACAGTTCATGATTTCACAGGATGAGCGTCTTAGATCAACTTCAGAAATTCTAAATAGCATGAAAATCATCAAGTTACAATCCTGGGATGACAAATTCAAGAATTTGGTGGAGAGCCTCCGTGCTAAAGAGTTCATTTGGCTGTCTAAGGCGCAGATCATGAAAGCTTATGGGTCATTTCTTTATTGGATGTCTCCTACCATTGTTTCTGCTGTTGTTTTCATCGGATGTGTTCTTTTCAATAGTGCCCCATTGAATGCTGGGACCATTTTCACAGTTTTTGCAACGTTGAGGAACCTGTCAGAACCTGTTCGAATGATTCCAGAGGCTCTATCTGTTATGATCCAAGTTAAGGTATCCTTCGATCGTCTCAATACAATTTTGCTTGATGAAGAGCTAGATATTAGTGACTATAACAGAAGAAATATTAACCAAAGTTCAGAAAATGCTGTGGAAATCCATGCCGGCAACTTCATTTGGGATCATGAATCAGTGTTCCCAACTTTAAGAGATGTGAATATAAAAATTAATTGGGGACAGAAAATTGCAGTTTGTGGGCCAGTTGGAGCAGGAAAATCATCTCTTTTATTTGCAGTACTTGGAGAGATTCCACGAATCTCAGGAACTGTCAACATGTCTGGCAGCGTGGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACTGTTCGAGATAATATACTCTTTGGCAAGCCAATGGACAAAACAAGATATGATAACGCCATTAAAGTTTGTGCTTTGGATAAGGATATTAATGATTTTAGCCATGGTGATCTTACAGAAATAGGACAGCGAGGGATTAACATGAGCGGAGGACAAAAGCAAAGGATTCAATTAGCTCGTGCAGTCTACAATGACGCTGACATCTATCTCCTTGATGACCCTTTCAGTGCAGTTGATGCTCACACTGCTGCTATGTTGTTCAACGATTGTGTGATGACTGCTCTAAGAGAGAAAACAGTCATTTTGGTGACTCATCAAGTGGAGTTTCTGTCAGAAGTTGATACAATCCTGGTAATGGAAGGTGGAAAAGTTACTCAATCAGGTAATTATGAGAATCTATTGACAGCTGGGGCAACCTTTGAACAGCTTGTGAGTGTTCATAAGGAAGCAATCACAGAGTTGGATAAAAATAAAGAAAACGAAATTCATACAGAAGAGTCTCAAGCTTTCTATCTCATTAAAAACCAAAGTGAGGGGGAGATTTCTAACGAGGGTCAACCTGGGGTACAGCTTACACATGAAGAAGAAAAAGAGATTGGTGATGTCGGCTGGGAGACAATCTGGGATTATATTTCATTTTCCAGAGGTTCATTGATGCTGTGTTGGATCGTTTTGGCACAATCTGCTTTTGTTGTTTTGCAGACTGCATCAATGTTTTGGCTTGCTCTTGCCAGTGAAGTTCCGAAATTAACTAGTGCCACCTTGATTGGAGTTTACTCATTAATTTCATTTGCTGGTACCTTATTTGTATTTCTAAGGACTATCTTCGGTGCACACCTAGGATTAAAAGCTTCAACCGCCTTCTTCTCAAGTTTCACTACTGCTATCTTCAATGCTCCTATGCTGTTCTTTGACTCAACCCCTGTAGGAAGGATCTTAACTCGAGCTTCAGCAGATTTAAGTATTTTGGACTTCGATATACCTTTTTCCATCACTTTTGTAGCATCTGTTCCCATTGAAATTTTGACGATAATCTGTATAATGATTTCCGTAACATGGCAAGTTCTCATTGTTGCTCTTCCAGCAATGGTTGCATCAAAATGTGTTCAGGGATATTATCAAGCCTCAGCAAGGGAATTAATAAGGATAAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCGTCTGAGACATCACTTGGTGTGGTTACTATAAGAGCATTTAAAATGACAGACAGATTTTTTAAAAATTACTTAAAACTTGTGGACACAGACGCAACAATGTTCTTTCATTCTAATGTGGCGATGGAATGGCTAGTTTTAAGGATTGAAGCACTTCAAAATTTGACAGTCATCACTGCAGCTTTTTTACTTGTTTTAGCTCCAAAGGGTTACGTGTCCCCAGGACTTGTGGGACTGTCTCTCTCTTATGCTTTCACGTTGACTGGAACCCAAATATTTATGACTCGATGGTATTGTAACTTACTGAACTATATTATCTCTGTTGAAAGAATCAAGCAATTCATTCGCCTACCAGTGGAGCCTCCAGCCATTGTGGAGGACAACCGGCCTCCATCTTCATGGCCTTCTATAGGAAGGATTGACCTCCAAGCCTTAGATATTAGCTATCGTCCTAATGCCCCTTTAGTGCTTAAGGGTATCACTTGCACATTTAAAGAAGGGACTAAAGTGGGAGTGGTAGGAAGGACTGGAAGTGGAAAAAGTACTCTCATAAGTGCTTTGTTTCGTATGGTTGAGCCAGCAAGAGGTTATATTCTTATAGATGGGCTTAACATATGCACAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGTATTAGGACCAACTTGGACCCTTTAGGCCTGTACTCAGATGATGATATATGGAAGGCTTTAGAGAAATGTCAACTTAAGGAAACCATCAGCCGTCTACCAAATCTCCTGGATTCTCCCGTGAGTGATGAAGGTGGAAATTATAGTTTGGGACAGCGCCAACTGTTTTGCCTTGGAAGAGTATTACTTAAAAGGAACAAAATTCTTGTTCTTGATGAAGCTACGGCCTCTATTGACTCTGCCACAGATGCCATTCTACAACGAATAATTAGACAAGAATTTGCAGAATGCAGTGTTATAACTGTGGCTCACAGGGTTCCAACTGTAATTGATAGTGATATGGTTATGGTCCTATCCTATGGAAAACTTGTGGAATATGACGAGCCTTCAAAGTTAATGGACACCAACTCTTCATTCTCGAAGCTGGTAGCTGAATATTGGTCTTGCTGCAGGAAAAATTCCTCCTAAATTTTAGCAGCCAGCAGCATCATGCAAATGGGAGATAAGATGACTAAAGGGTGCATAGATAAAGTGAAATATTTTAAGGGCATCCATACCTTTATAGTTTAACTTGCTATTTTGCCATGAGAGTTATTTATGTTGGAAATAATAGTAGATTGATATTAATAAATTATCTTTTATTATCATCTGACAATTTAAGATATAGTGATACTGATATCTTATATTAATCTTTATAATTATTTGAATG 4600 0.3917 DDFSWFCLKDLDFTSLCSQRITIDAINLLFVCVFYTFMIVCLIRRNSIHGSFRKSWLFLITSIWCAVISIVYYIIGLCHLIAKTNNSKVKQLTCLSCFVRGFVWTSLAVSFIVKRHKWTNILNCVWWGSSCALVSALNIQILFKNHAIEFFYMVQWLVHFLFLFCVFQNIGYFVAQRAPETLSEPLLAQEVDTKQTGLGRANFLSKLTFSWVNSLLNLGYSKPLALEDIPLLLSDDEADLAYQNFKHAWESLLTERRKNNTQNMVLWAVVRTHLEDNILIAFYALLRTIAITVSPLILYAFVNYSNSKDAKDTGLKEGFSIVGFLILSKVVESVSQRHWFFDSRRSGLKMRSALMVAVYKKQLKLSSSARRKHSTGEILNYIAVDAYRMGEFPWWFHTSWTSAVQLVLSIGVLFGVVGVGALPGLVPLFICGLLNVPFAKILQSCQSQFMISQDERLRSTSEILNSMKIIKLQSWDDKFKNLVESLRAKEFIWLSKAQIMKAYGSFLYWMSPTIVSAVVFIGCVLFNSAPLNAGTIFTVFATLRNLSEPVRMIPEALSVMIQVKVSFDRLNTILLDEELDISDYNRRNINQSSENAVEIHAGNFIWDHESVFPTLRDVNIKINWGQKIAVCGPVGAGKSSLLFAVLGEIPRISGTVNMSGSVAYVSQTSWIQSGTVRDNILFGKPMDKTRYDNAIKVCALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAMLFNDCVMTALREKTVILVTHQVEFLSEVDTILVMEGGKVTQSGNYENLLTAGATFEQLVSVHKEAITELDKNKENEIHTEESQAFYLIKNQSEGEISNEGQPGVQLTHEEEKEIGDVGWETIWDYISFSRGSLMLCWIVLAQSAFVVLQTASMFWLALASEVPKLTSATLIGVYSLISFAGTLFVFLRTIFGAHLGLKASTAFFSSFTTAIFNAPMLFFDSTPVGRILTRASADLSILDFDIPFSITFVASVPIEILTIICIMISVTWQVLIVALPAMVASKCVQGYYQASARELIRINGTTKAPVMNFASETSLGVVTIRAFKMTDRFFKNYLKLVDTDATMFFHSNVAMEWLVLRIEALQNLTVITAAFLLVLAPKGYVSPGLVGLSLSYAFTLTGTQIFMTRWYCNLLNYIISVERIKQFIRLPVEPPAIVEDNRPPSSWPSIGRIDLQALDISYRPNAPLVLKGITCTFKEGTKVGVVGRTGSGKSTLISALFRMVEPARGYILIDGLNICTMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDDIWKALEKCQLKETISRLPNLLDSPVSDEGGNYSLGQRQLFCLGRVLLKRNKILVLDEATASIDSATDAILQRIIRQEFAECSVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMDTNSSFSKLVAEYWSCCRKNSS 1452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00962 1452 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 200 1441 - -
Pste6g00962 1452 FunFam ABC transporter C family member 10 261 578 - -
Pste6g00962 1452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1198 1441 IPR027417 -
Pste6g00962 1452 SUPERFAMILY ABC transporter transmembrane region 881 1190 IPR036640 GO:0005524|GO:0016020
Pste6g00962 1452 FunFam ABC transporter C family member 3 1191 1442 - -
Pste6g00962 1452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 819 IPR027417 -
Pste6g00962 1452 Gene3D ABC transporter type 1, transmembrane domain 265 570 IPR036640 GO:0005524|GO:0016020
Pste6g00962 1452 CDD ABCC_MRP_domain2 1206 1426 - -
Pste6g00962 1452 FunFam Multidrug resistance protein associated1 575 840 - -
Pste6g00962 1452 CDD ABC_6TM_ABCC_D1 279 570 IPR044746 GO:0140359
Pste6g00962 1452 Pfam ABC transporter transmembrane region 278 542 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste6g00962 1452 Pfam ABC transporter transmembrane region 926 1158 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste6g00962 1452 Gene3D - 1191 1442 IPR027417 -
Pste6g00962 1452 FunFam ABC transporter C family member 5 857 1189 - -
Pste6g00962 1452 Pfam ABC transporter 1225 1373 IPR003439 GO:0005524
Pste6g00962 1452 CDD ABCC_MRP_domain1 597 797 - -
Pste6g00962 1452 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 896 1171 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste6g00962 1452 Pfam ABC transporter 615 749 IPR003439 GO:0005524
Pste6g00962 1452 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1210 1442 IPR003439 GO:0005524
Pste6g00962 1452 Gene3D - 571 847 IPR027417 -
Pste6g00962 1452 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 599 820 IPR003439 GO:0005524
Pste6g00962 1452 SUPERFAMILY ABC transporter transmembrane region 266 576 IPR036640 GO:0005524|GO:0016020
Pste6g00962 1452 ProSitePatterns ABC transporters family signature. 1345 1359 IPR017871 GO:0005524|GO:0016887
Pste6g00962 1452 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 278 562 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste6g00962 1452 Gene3D ABC transporter type 1, transmembrane domain 860 1188 IPR036640 GO:0005524|GO:0016020
Pste6g00962 1452 ProSitePatterns ABC transporters family signature. 722 736 IPR017871 GO:0005524|GO:0016887
Pste6g00962 1452 CDD ABC_6TM_ABCC_D2 890 1183 IPR044726 GO:0140359
Pste6g00962 1452 SMART AAA_5 624 797 IPR003593 GO:0016887
Pste6g00962 1452 SMART AAA_5 1234 1426 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00962 Pste-Chr6 3823201 3829048 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00962 585 824 Calmodulin-binding Proteins AT2G36910 26.415 8.59e-22 101