LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g00961	GAGGCTCGGAATGAAAATGAGATCAGCTTTAACGGTTGCAGTGTATCAAAAAGAATTAAAACTTTCAGCTTTGGGTACGAGAAAACATTCCACTGGTGAGATTGTGAATTACATTGCAGTTGATGCTTATCGAATGGGAGTTTCCATGGTGGTTTCATACATTAATTTTTTCTGCATTACAATTTTTTCTGGCCCTTTGTGTTCTTTTTGGTGTTGTGGGTCTAGGTGCTCTTCCTGGTTTAGTGCCTCTTCTCATTTGTGGATTTCTCAATGTACCATTTGCAAAGATCCTTCAAAAATGTCAGAATTTATGATTGCACAGGATGAGCGTTTGAGGTCAACTTCAGAGATTCTTAGTATGAAAATCATAAAGCTACAATCCTGGGAGGATAACTTCAAGAAGTTAGTTGAATACCATCGTGCTAAAGAGTTTAAATGTTTGGCTGAAGCACAGTTCATGAAAGCTTATGGAACATCTATATATTGGATGTCTCCTTCCATCATTTCTTCAGTTATCTTCGTAGGATGTGTGCTTTTACAGAGTGCCCCTTTGAATGCTGAAACTATCTTCTCAGTTCTTGCTGCACTGAGAAGCATGGGAGAACCTGTCACATTGATTCCAGAAGCTCTTTCTGTTCTGATCCAAGTTAAGGTCTCCTTTGATCGTCTCAACACCTTTTTGCTTGATGATGAGATAAAAAATTATGATATTAGAAGAAGTTCAAAACAAGTTTCTTGCAGCAAGAGTGTCAAGATTCTAGCAGGCAATTTCAGTTGGGATCAGCAATCATTGCCTCCAACTTTGAGAAAAGGGCAGACAGTAGCAGTTTGTGGCCCAGTTGGATCAGGAAAAACATCTCTCCTATATGCAATACTTGGAGAGATACCCAAAATTTCAGGAACTGTTAGTGTAGGTGGAACAAGTTCCTACGTTTCCCAAACCCCTTGGATCCAAAGTGAGCTTTCAACATGGCTGACAGATTTTTCAAAAATTACCAAAAGCTTGTTGACAGATGCTACAATGTTCTTTCCTTCTAATGCTGCCATGGAATGGTTAATTCTAAGGATTGAAGTACTTCAGAATTTGACATTCTTTACTGCAGCTTTGCTACTTGTTCTACTTCTAAAGGGATATGTGGCTCCTGTTTATCTGACTCGAATGTTTTGCAACTTATCGAATTATGTGATCTCTGTTGAAAGAATCAAGCAATCCATTCACATATCAGCAGAGCCTGGTGCAATTGTCGAGGACAATAGACCACCACCTTGTTGGCCTTCCAAGGGTAGAATAGATGTCCAATCTCTAGAGATTAGATATCGTCCAAATGTTCCATTTGTTGTTAAGGGCATCTCTTGTACATTTAAAGAAGGGAGTAAAGTGGGAGTTGTGGGAAGGACTGGAAGTGGAAAAACTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCTCACAAGAGGTAACATTCTTATAGATGGGATTAATATATGCTCAATAGGGCTAAAAGATTTGAGAATAAAGCTAAGCATTATTCCTCAAGAACCAACACTTTTCAAGGGTAGCATTCGAAAAAACTTGGACCCTCTAGGCCTGTACTTTGATGATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTTAAGTCAACAATTACTAGTCTACCAAATTTCTTGGACACTTCTGTGAGTGATGAAGGTGAAAACTGGACTGTGGGGCAGCGCCAACTCATACGTCTAGGAAGAGTACTTCTTAAGAGGAACAAAATTCTAGTTCTGGATGAAGCTACTGCTTCCATTGATTCTGCCACAGATACAAGAATTGCAGATTGCCCAGTTATAACTGTGGCTCACATAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTCCTATCTTATGGTAAGTTGTTATTTTGGGGGGAGGGGGTTACAAATTATGGTATGTTACTTGGTTGTTCGTGTCTGTTTTTCTTTTCCTACATACAGCTATGCTACTTCTCTAGTCATCCCATTTTCCTCATGTTTATTCTGGGAAACTGTTGGAGTATGACAAGCCTAAAAAGCTTATGGATACCAACTCTTGATTCTCTAAGCTGGTATCTGAATATTGGTCCAACTGCAATAGGAAATTTCTCCCAAAAGATTAGCATGCATCAACATTAGCTAAGAGGAGAAGCAATATAGC	2180	0.3913	MKMRSALTVAVYQKELKLSALGTRKHSTGEIVNYIAVDAYRMGVSMVVSYINFFCITIFSGPLCSFWCCGSRCSSWFSASSHLWISQCTICKDPSKMSEFMIAQDERLRSTSEILSMKIIKLQSWEDNFKKLVEYHRAKEFKCLAEAQFMKAYGTSIYWMSPSIISSVIFVGCVLLQSAPLNAETIFSVLAALRSMGEPVTLIPEALSVLIQVKVSFDRLNTFLLDDEIKNYDIRRSSKQVSCSKSVKILAGNFSWDQQSLPPTLRKGQTVAVCGPVGSGKTSLLYAILGEIPKISGTVSVGGTSSYVSQTPWIQSELSTWLTDFSKITKSLLTDATMFFPSNAAMEWLILRIEVLQNLTFFTAALLLVLLLKGYVAPVYLTRMFCNLSNYVISVERIKQSIHISAEPGAIVEDNRPPPCWPSKGRIDVQSLEIRYRPNVPFVVKGISCTFKEGSKVGVVGRTGSGKTTLISALFRLVELTRGNILIDGINICSIGLKDLRIKLSIIPQEPTLFKGSIRKNLDPLGLYFDDEIWKALEKCQLKSTITSLPNFLDTSVSDEGENWTVGQRQLIRLGRVLLKRNKILVLDEATASIDSATDTRIADCPVITVAHIVPTVIDSDMVMVLSYGKLLFWGEGVTNYGMLLGCSCLFFFSYIQLCYFSSHPIFLMFILGNCWSMTSLKSLWIPTLDSLSWYLNIGPTAIGNFSQKISMHQH	715

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g00961	715	Gene3D	-	244	364	IPR027417	-
	Pste6g00961	715	SMART	AAA_5	267	448	IPR003593	GO:0016887
	Pste6g00961	715	SMART	AAA_5	453	630	IPR003593	GO:0016887
	Pste6g00961	715	CDD	ABCC_MRP_domain2	425	632	-	-
	Pste6g00961	715	Pfam	ABC transporter	445	592	IPR003439	GO:0005524
	Pste6g00961	715	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	195	319	IPR027417	-
	Pste6g00961	715	Gene3D	ABC transporter type 1, transmembrane domain	1	232	IPR036640	GO:0005524\|GO:0016020
	Pste6g00961	715	Pfam	ABC transporter	264	322	IPR003439	GO:0005524
	Pste6g00961	715	Gene3D	-	410	638	IPR027417	-
	Pste6g00961	715	FunFam	Multidrug resistance-associated protein member 4	411	640	-	-
	Pste6g00961	715	SUPERFAMILY	ABC transporter transmembrane region	2	224	IPR036640	GO:0005524\|GO:0016020
	Pste6g00961	715	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	429	653	IPR003439	GO:0005524
	Pste6g00961	715	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY C	328	638	-	-
	Pste6g00961	715	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	416	636	IPR027417	-
	Pste6g00961	715	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	99	212	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g00961	Pste-Chr6	3816958	3820291	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g00961	424	635	Calmodulin-binding Proteins	AT2G36910	28.251	1.74e-24	107

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste6g00961	6	3816958	3820291	Pste6g00961	6	3816958	3820291	ECH