Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00919 atggaaaaccagttttttcttaatgctggggtgtcacaaagacaacaccctcttcactttgagccttcatcaaacccctcttggcaatcacacatgggaattcaaccaaatgttgtgaattgtggttctgagcaaacccaagattgcttttacaaccaccaccccagttgggaaaagtcaacttcagatcatggacttcaccactttgattcctcagcactgagttcaatggtttcatctcctgctgcagcatccaaccccaacaacatgtccagtgagaatttcatcatcagggaattggtggggaagttggggactattgggggttctgatgagatccctcaacactcttctcaccctttggttgtggcttcttcttacatgaataatggcaataacagccccaacacttcatgctacaccacccctttgagttcccctcctaaggtgaacattgtccatagtttggtcaatgagaggttggcaaatttgggaggaaagtcaatggctttgaattccagtgtggcagaattctcagctgatcctggctttgctgagagggctgcaaagttttcttgctttggcagcaggagtttcaatgataggagtgtccaattgggagtaaacaatgctgaattgcctcaaagatctgcaacagtgattgaacatgttggaaatttatctagagtctcaagtagtccattgctcaaaacagttggatctcaaatgggtgctcaagagaacaagaatttggcaattcaggagcaggagaaaatggaaggggtcaattctccagtggaatctacaatttctgaacaaacccctaatggggaaattgtggtgaaaacttcccaagatatgattaattcaaggaaaagaaaagtttcttccaaaggaaaagccaaagaaacttcaaagggtcttgaaggtagtgaagattccaattcaaaacgtacaaagccaaatgagggtgagggaaatgaaagtggcacagtgaaggttgaggaagagtccaaagcggtggaagagaaacagaacaaaagtaactcaaaacctcctgagccaccaaaagattacattcatgtgagagcaagaagaggccaagccactgacagccatagtcttgcagaacgtgtacggagggagaaaatcagtgagaggatgaagctgctccaagatcttgtaccaggttgcaataaggtcactggcaaagcactgatgctagatgaaattataaattatgtccagtcattgcagcgtcaagttgagttcctgtctatgaagttggcttctgttaacacaagaatggatctcagcattgaaagtcttgtttcaaaagatgtatttcaatcaaacaatgctttggctacacacccaaatgcaatattcccattagattcctcagcacaagccttttatggacaccagcctcagcaaaacccagttatccataataacatgcctaacagaacggtgtcccacagctctgtggacccattggactcttctatgtgccaaaatcttgccatgcaattaccccctctaaatggatttaatgaaggtgcctctcagtttccattaacattttgtgaggatgatctgaacaccattgttcagatggggtttggccaaactgcaaataggaaaataccaatacaatccccaagtttcaacggttcaaataatgttccacatatgaaagttgagctctga 1713 0.0 MENQFFLNAGVSQRQHPLHFEPSSNPSWQSHMGIQPNVVNCGSEQTQDCFYNHHPSWEKSTSDHGLHHFDSSALSSMVSSPAAASNPNNMSSENFIIRELVGKLGTIGGSDEIPQHSSHPLVVASSYMNNGNNSPNTSCYTTPLSSPPKVNIVHSLVNERLANLGGKSMALNSSVAEFSADPGFAERAAKFSCFGSRSFNDRSVQLGVNNAELPQRSATVIEHVGNLSRVSSSPLLKTVGSQMGAQENKNLAIQEQEKMEGVNSPVESTISEQTPNGEIVVKTSQDMINSRKRKVSSKGKAKETSKGLEGSEDSNSKRTKPNEGEGNESGTVKVEEESKAVEEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDLSIESLVSKDVFQSNNALATHPNAIFPLDSSAQAFYGHQPQQNPVIHNNMPNRTVSHSSVDPLDSSMCQNLAMQLPPLNGFNEGASQFPLTFCEDDLNTIVQMGFGQTANRKIPIQSPSFNGSNNVPHMKVEL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00919 570 MobiDBLite consensus disorder prediction 300 359 - -
Pste6g00919 570 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 366 437 IPR036638 GO:0046983
Pste6g00919 570 Gene3D - 365 440 IPR036638 GO:0046983
Pste6g00919 570 Coils Coil 415 435 - -
Pste6g00919 570 MobiDBLite consensus disorder prediction 257 359 - -
Pste6g00919 570 FunFam Basic helix-loop-helix transcription factor 365 437 - -
Pste6g00919 570 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 368 418 IPR011598 GO:0046983
Pste6g00919 570 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 262 480 IPR024097 GO:0006355
Pste6g00919 570 Pfam Helix-loop-helix DNA-binding domain 372 419 IPR011598 GO:0046983
Pste6g00919 570 MobiDBLite consensus disorder prediction 261 286 - -
Pste6g00919 570 SMART finulus 374 424 IPR011598 GO:0046983
Pste6g00919 570 CDD bHLH_AtBPE_like 358 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00919 Pste-Chr6 3602037 3605823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00919 1 529 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 42.144 7.46e-104 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste6g00919 HLH 4.5e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02543 5 17889199 17892165 Pste6g00919 6 3602037 3605823 PCT