Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00885 CCACAACAAACACGCTGCATCAGTACTGGACTTCAATGGCAGATGAAGTTATGTCCACATTGAATTTCAAGAAGGCACTTAATACCACAACCAGATTGTGCAAACCCTTGGTATAAAATTTTGGTTCAATCCTCTGTTTCGTTGCTGACATTGAAGACTTTTACACAATTAATTAAGGATTATTTTAGTATTTTGGTTTTGACAGCAGTTGATCTACAAGTGGGAATTGTCATCTATGGATGGTATGAATTGGGATGCCTCACAACTTGCAGCAAGCACACAAATCGTGTGGAGTGCTATTCAGCAATCACCAGATTTTGAAGGAGGCTACACCAGGCCCAATGTTCTAAGTCAAATACAAGAGATGCAGAAAGCTCAAACAGGTCATGCATACTCAAAGTCTGAAAGAGTGATTTATCAGTCAGCAGCTGCTACCAACACTTCTTCAGAGATGATGGATGCGATGCCAAAGCAAAACACAGATCTGCCACAGCATGTGTCAGCCATGCCAGTGAAATCAGGAGCTGGAGCCATTTGGGCAGAAGCTTTAACATCCCAATCATACCCGTCTCTATCTGTCAATGGACCTCACAGTATGAACCTGATTAGCAACTATATGCCAGATTTCAACATGGCCCACCAGCAGCAACAACGACAACTTGTCAATGGCTCACAAAAAGGGAAGGGTGCTTGCTCTCTTGGGTCTTTTGATTGTTTGATTTCAGCCACCAACAGCAACACAGATACTTCTGTTGAAGATGATGGGATCTCAATGATTTTATCTGACTGTGGAAACTTGTGGAACTTCAGTTATGGCAGTGCAGCTTCCACTGGTGAATCTGAGAGCAATGCTTCCTATGGTAGAAACAAAGACATGCAGTGTCCAGTGAACGAAGTTGGTGAAACAATTTCTCAAACAGTTGAATCAGAGGCTAATTGTTCTAAGGAGAGTCATGGTCAATCTGAAATGATCAAAGTTGGTGCCACTGCCAGTGATTCCAGCTTCAGTATTGTTAAGAATTCTTCTTCTATTGAAGAAGGTGGTTTCAGACTCATCTCGGATAATCCACCAAAATGCAAGAAGCCCAGATGGGATATGAGTTCCTCCTCAAACAGTATCAATTTCAAGCTACCAAATTCATCCATGTCTCCATCCATCGAGGAACCTGATCCAGAGGCCATTGCACAAATGAAGGAAATGATATATAGAGCTGCAGCTTTTAGGCCTGTGAACTTTGGCTTGGAAGTGGCTGAAAAGCCTAAGAGGAAGAATGTGAGGATATCAACTGATCCACAAACTGTGGCTGCAAGGCACAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGCTTGTGCCTGGGGGAAGCAAGATGGACACAGCATCAATGCTTGATGAGGCTGCAAACTACCTCAAGTTTCTCAGGTCACAGGTCAAGGAACTGGAAAGTCTGGGGAACAAAGTTGACGCAATGGATTGTCCTCCTACCAGCATTGCCTTCTCTTTCAACCCTTCTTTTCCCATGCAAACACCCCTCAGTCACATCCATCATTCCCTGGGTTGA 1570 0.435 MDGMNWDASQLAASTQIVWSAIQQSPDFEGGYTRPNVLSQIQEMQKAQTGHAYSKSERVIYQSAAATNTSSEMMDAMPKQNTDLPQHVSAMPVKSGAGAIWAEALTSQSYPSLSVNGPHSMNLISNYMPDFNMAHQQQQRQLVNGSQKGKGACSLGSFDCLISATNSNTDTSVEDDGISMILSDCGNLWNFSYGSAASTGESESNASYGRNKDMQCPVNEVGETISQTVESEANCSKESHGQSEMIKVGATASDSSFSIVKNSSSIEEGGFRLISDNPPKCKKPRWDMSSSSNSINFKLPNSSMSPSIEEPDPEAIAQMKEMIYRAAAFRPVNFGLEVAEKPKRKNVRISTDPQTVAARHRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKELESLGNKVDAMDCPPTSIAFSFNPSFPMQTPLSHIHHSLG 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00885 444 Gene3D - 354 416 IPR036638 GO:0046983
Pste6g00885 444 FunFam BHLH transcription factor 352 415 - -
Pste6g00885 444 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 349 398 IPR011598 GO:0046983
Pste6g00885 444 Pfam Helix-loop-helix DNA-binding domain 359 398 IPR011598 GO:0046983
Pste6g00885 444 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 134 434 IPR045843 GO:0003700|GO:0006355
Pste6g00885 444 SMART finulus 355 404 IPR011598 GO:0046983
Pste6g00885 444 Coils Coil 388 408 - -
Pste6g00885 444 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 354 408 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00885 Pste-Chr6 3451899 3453841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00885 96 441 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 46.961 3.71e-83 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste6g00885 HLH 3e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g00885 6 3451899 3453841 Pste6g00885 6 3451899 3453841 ECH
Pste3g03587 3 28178432 28180474 Pste6g00885 6 3451899 3453841 PCT