Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00843 atggaagctaacgagattcgtgaactcaagataccgctgttgcagactccacaagagggcgccgttaggaccgttacgtttcaattaagtggcatcgagtgtgcctcgtgtgtgaattccgttgaatccgtcgttaagaacattcacggcgtcaaaagcgtcgccgtttcgccgcttgatggccgcgccgcaatcaagtttgttcctaacttcgttacatcattggtcggagtggtactgtattcggttcacctaagcaaggtttctggttcaggtcttgtggatggagaaaacatggttgggaaggagaccttattaaaggtgaaacaaataaaagaaagcatagaggacagtggctttggagttgatgagcttcatgaacaggaaatagcagtgtgccgagtaaggattaaaggaatggcatgcacaagctgctcagagtctgttgagaatgctcttcaaatggttgaaggggtgaaaaaggctatagttggtctcgctttggaggaggcaaaagtgcactttgatcctaacctcactgatgttgacaagataattgaggccatagaagatacgggttttggggctgatcttattagctctgggaatgacgcaaataaaatgtatctaaagattgaaggggttgattccgcagaagatgtaaatgtagtaatgtcttctcttgagttagctgttggggtgaaccatgttgagatggatttgtcagaacataaagttacggttagctatgatccagacattacaggtccaaggtctctcattcaatgtgttcaggaagccagctgtggccccaagaagtatcaagcaaccttatacactccttctgggcagagagaaaaggataaggtgaatgaaatccacatgtatagggatcaatttttgttcagctgcttattttctgttcctgtgtttgtatttgccatggtgcttcccatgcttcctccttatggcaactggttagactacaagatccacaatatgcttactcttgggttgtttttaagatggattcttagcacacccgtgcaattcatagttggcaaaaggttctatctgggatcgtatcatgcactgaagcgaaaatctgctaacatggatgtgctggttgcgctaggcactaatgctgcttatttttactctctctatattctactaaaagcactgacttcagatacttttgaaggacaagatttctttgagacaagttccatgttgatatcttttattctattagggaagtatttggaaattgtggctaaaggaaaaacatcagatgctttaggaaagctgactcagcttgttcctgataaagcttatttagtagcaattgatgctgatggaaatatcatcacagagacagaaattgacactcaacttatacaaaaaaatgacataattaagattgttcctggggccaaaattcctgttgatggtattgttataaaagggcaaagttatgcaaatgaaagtatgatcactggggaggcaagacctgttgacaaaagcccaggagacaaggttatcagcggaactatcaacgagaatggctgcatactggttaaagcaacacatgttggatccgacactgcactttctcaaatagttcaactcgttgaagcagctcaactggcaaaagcaccagttcaaaaacttgctgaccatatttcacgggtttttgttccaatagtggttgttgcagcactgttaacttggcttggatggttcattcccggggaagctggtatttaccctaaacattggataccaaaagcaatggatgcatttgagcttgctttgcagtttgccatttctgtgctggttgttgcttgcccatgtgctctgggtcttgcaacaccaactgcagtcatggttgcttcaggtatgggtgcatctcaaggcgtgctcatcaagggtggagatgcacttgaaaaggcacataaggtaaaaactgttgtgtttgataagactgggacattaacaattgggaagccagaagtagtcagtgcagtcctgttttctgaattttctatggaggaattatgtgacacgacaattgctgtggaggtaagtagtgagcacccgctagcaaaagctgttgtggctcatgcaaagaggttgcgccagaaatttggttcttccacagtggaagtcccagatgtggatgatttcgaggtgcatatgggtgctggtgtaagtggaaaagttggtcatagaacgattctagttggaaacaagagactgatgcatgcttgtaatgttccagtgtgttctgaggttgagaagtacatctctgaaaatgaaattcaggctagaacttgcgttttagttgcaatagatggaaagattgctggtgcattctctgtaacggatcctgtgaaaccagaggctaaacgtgtcatatcttttctccactccatgggcatctcaagcatcatagtgactggtgataaccgtgctactgcaactgctattgcaaatgaagttggtattgatgaggtctttgctgagacagatccagtaggcaaggctaataaagtgaaagacttgcagatgaaaggaatgactgtggcaatggtaggtgatggtattaatgactcaccagcactggtcgctgcagacgttggcatggctattggtgctggaactgacatagccatagaagcagctgatatagttctggtcaaaagcagtttggaagatgtgatcacagccatagatctatctagaaagaccatgtcacgcatccggctgaactacatctgggctcttggttacaacattcttggcatgccaattgcagctggagtcttgtaccccttttctggaatcagattgcccccatggcttgccggtgcttgcatggctgcttcctctattagtgtggtttcttcctctcttctgttgcagttctataaaaaacctttgcatatagaatcctcttga 2964 0.0 MEANEIRELKIPLLQTPQEGAVRTVTFQLSGIECASCVNSVESVVKNIHGVKSVAVSPLDGRAAIKFVPNFVTSLVGVVLYSVHLSKVSGSGLVDGENMVGKETLLKVKQIKESIEDSGFGVDELHEQEIAVCRVRIKGMACTSCSESVENALQMVEGVKKAIVGLALEEAKVHFDPNLTDVDKIIEAIEDTGFGADLISSGNDANKMYLKIEGVDSAEDVNVVMSSLELAVGVNHVEMDLSEHKVTVSYDPDITGPRSLIQCVQEASCGPKKYQATLYTPSGQREKDKVNEIHMYRDQFLFSCLFSVPVFVFAMVLPMLPPYGNWLDYKIHNMLTLGLFLRWILSTPVQFIVGKRFYLGSYHALKRKSANMDVLVALGTNAAYFYSLYILLKALTSDTFEGQDFFETSSMLISFILLGKYLEIVAKGKTSDALGKLTQLVPDKAYLVAIDADGNIITETEIDTQLIQKNDIIKIVPGAKIPVDGIVIKGQSYANESMITGEARPVDKSPGDKVISGTINENGCILVKATHVGSDTALSQIVQLVEAAQLAKAPVQKLADHISRVFVPIVVVAALLTWLGWFIPGEAGIYPKHWIPKAMDAFELALQFAISVLVVACPCALGLATPTAVMVASGMGASQGVLIKGGDALEKAHKVKTVVFDKTGTLTIGKPEVVSAVLFSEFSMEELCDTTIAVEVSSEHPLAKAVVAHAKRLRQKFGSSTVEVPDVDDFEVHMGAGVSGKVGHRTILVGNKRLMHACNVPVCSEVEKYISENEIQARTCVLVAIDGKIAGAFSVTDPVKPEAKRVISFLHSMGISSIIVTGDNRATATAIANEVGIDEVFAETDPVGKANKVKDLQMKGMTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLVKSSLEDVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGVLYPFSGIRLPPWLAGACMAASSISVVSSSLLLQFYKKPLHIESS 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00843 987 SUPERFAMILY HMA, heavy metal-associated domain 19 73 IPR036163 GO:0046872
Pste6g00843 987 FunFam Copper-transporting ATPase 1, putative 427 549 - -
Pste6g00843 987 ProSitePatterns Heavy-metal-associated domain. 29 57 IPR017969 GO:0046872
Pste6g00843 987 SFLD C1.7: P-type atpase like 641 918 - -
Pste6g00843 987 SUPERFAMILY Calcium ATPase, transmembrane domain M 399 651 IPR023298 -
Pste6g00843 987 ProSitePatterns Heavy-metal-associated domain. 137 166 IPR017969 GO:0046872
Pste6g00843 987 NCBIfam heavy metal translocating P-type ATPase 372 975 IPR027256 GO:0006812|GO:0016020|GO:0019829
Pste6g00843 987 Gene3D - 204 280 - -
Pste6g00843 987 Gene3D - 132 202 - -
Pste6g00843 987 Gene3D - 19 123 - -
Pste6g00843 987 NCBIfam HAD-IC family P-type ATPase 412 943 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pste6g00843 987 Gene3D - 670 799 IPR023299 GO:0000166
Pste6g00843 987 ProSitePatterns E1-E2 ATPases phosphorylation site. 661 667 IPR018303 -
Pste6g00843 987 FunFam Copper-transporting ATPase HMA5 130 201 - -
Pste6g00843 987 SUPERFAMILY Calcium ATPase, transduction domain A 459 545 IPR008250 -
Pste6g00843 987 FunFam Probable copper-transporting ATPase HMA5 781 923 - -
Pste6g00843 987 SUPERFAMILY HMA, heavy metal-associated domain 128 202 IPR036163 GO:0046872
Pste6g00843 987 ProSiteProfiles Heavy-metal-associated domain profile. 131 197 IPR006121 GO:0046872
Pste6g00843 987 ProSiteProfiles Heavy-metal-associated domain profile. 23 91 IPR006121 GO:0046872
Pste6g00843 987 SUPERFAMILY HMA, heavy metal-associated domain 202 271 IPR036163 GO:0046872
Pste6g00843 987 NCBIfam copper ion binding protein 135 195 IPR006122 GO:0005507
Pste6g00843 987 Gene3D - 650 916 IPR023214 -
Pste6g00843 987 ProSiteProfiles Heavy-metal-associated domain profile. 206 272 IPR006121 GO:0046872
Pste6g00843 987 Pfam haloacid dehalogenase-like hydrolase 655 880 - -
Pste6g00843 987 PRINTS P-type cation-transporting ATPase superfamily signature 659 673 - -
Pste6g00843 987 PRINTS P-type cation-transporting ATPase superfamily signature 889 901 - -
Pste6g00843 987 PRINTS P-type cation-transporting ATPase superfamily signature 866 885 - -
Pste6g00843 987 PRINTS P-type cation-transporting ATPase superfamily signature 813 823 - -
Pste6g00843 987 PRINTS P-type cation-transporting ATPase superfamily signature 495 509 - -
Pste6g00843 987 PRINTS P-type cation-transporting ATPase superfamily signature 791 802 - -
Pste6g00843 987 Pfam Heavy-metal-associated domain 134 194 IPR006121 GO:0046872
Pste6g00843 987 Pfam Heavy-metal-associated domain 26 69 IPR006121 GO:0046872
Pste6g00843 987 CDD HMA 26 70 IPR006121 GO:0046872
Pste6g00843 987 Pfam E1-E2 ATPase 443 637 - -
Pste6g00843 987 CDD P-type_ATPase_Cu-like 300 962 - -
Pste6g00843 987 SUPERFAMILY HAD-like 657 972 IPR036412 -
Pste6g00843 987 CDD HMA 135 196 IPR006121 GO:0046872
Pste6g00843 987 SFLD p-type atpase 641 918 IPR044492 -
Pste6g00843 987 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 18 982 - -
Pste6g00843 987 Gene3D - 427 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00843 Pste-Chr6 3256497 3265991 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00843 27 985 Primary Pumps ATPases AT1G63440 55.544 0.0 1053