Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00824 AAAAAATATAAAAAGCAAAGCTAGTCAACAATTCCACGCCATTACATTACATACATAGCTCCCTCTCTACTCTCTACCTTTTGCTTTGCCTTTGAATGTGTTCTCTTTTCTCTTCGTGGGTCTTTTAGTACGTGGCAGGTGCTTCTTCAGATATCAAAGGTTCAACATCAACTACTTGTTTTGTTTCCATAGTTAAAGGAAAAGAAAAGGAGAAAATTGCAATTTGCAAGCAAGATGTGGCAAAGAAGCCACAAGTCATCAGAGGAGAGGAAACTGGAACTCAGGCTTGGTCCACCTGGTGAAGAGTCTCTCACTGAAAACATTAAAAAGAGCAGCAGAGATAGAAATGATTCACCACTCGGTCTTGGTGGGGCTATCTTGCCCTCTGCATGGCCTTCCACTTCCACTTCCACATCCAAAGCTAAAGCTTCATCATTTCTTCTGCTCCAAAACATGATAGTCACGGGAAAGGATGTGTCACAATTCTCTTGTGTAGAGAATAAGGCTTTCTCACCCTCTTGCGCAAATACATCTCTGTCCAAAAGAACTGTTTCGGGGCCAGTAGTGGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACATTGCAAGTGGAAGCTCTTCTAAGTTGCCTTCTGGGTCCCAGCAACATGAACATATTGTTTCAGACAATGTTGCTAGCAAAAAACCTACTGACAACTGTGGTAAAGGCTTGTTTGTGAAGATCAATATGGATGGAGTTCCCATTGGGAGAAAAGTGGACATCAATGCTTATGACAGCTATGAAAAACTTTCCTCTGCTATTGATGAGCTCTTTAGGGGCCTCCTTGCAGAGATGAAGTCATCTCATTCTCATACTGTCTCTTCCTATTGCTGTTCTGGTCAAAGAGATTCTTGTGCTGGTGGAATTCAAAACAAGGAAGAGGAAGAGAAAGCCAATACGGGTTTATTGGTTGGAAGTGGAGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAAGATGCTTGTTGGAGATGTGCCGTGGCACATGTTTGTGTCGACAGTGAAGAGACTGAGGGTGTTGAAGAGTTCTGATCTTCCTGCTTTTACCCGTGAGTTGGAGACCCTAAATTGAAAAGAATTAGTTCATTATCCCCCTCCCCATGTTTATGTCTTGGTTATGATTGAAGATTGAAGAAACGTTGTTGTTCTCAGTTGGTAATAAGCAAGATTAGCAACGCCACTTCACTTGACAATGAGAAATTAAGGATGAAGCTGTTAGATATCTTTTTCCATGATGAAAACTCTAAGACTAATTAAGAGTTTTTTATTGACATTTTGGTTCCTTTTGACATTGAAGATTAGGGAAATCAAATGTTCAATTTATAAGTAATATTTGTATGAATGAATGTATCTTGTTGGTAGTGAAGTTTTGAATTGTTTCTGCACTTTAAAAAAAGTTTAAGGTAAACTTCACGGATGTGTGCGAACTCATGATTTTGCCATTAACTTATATTGGCTTGCGTTCTGATACCATGTTTGGAAAAATGGTGAGACTCCAAAATCAAATTTGTAGGTAGATGATATGGTTTAAGTTGGAAATTTTATATTAAGTTGTACAAATTTAAGAAGAATGTTTCAAAACATGAATCATAAATAGCTAATACAAAATCAAGTTGGTAAATGTTCATGCAAACTCACACTGATCCCCTTTTAACCTTTTCCAAATATTTAAAATAATATTTCTTATGAGTCTCATATTTAAATACTTAATCCCATGATCAAGAGTTTAATATTTGGAATTTTTTGTTAGATATTAGACAAAAGAGATTTTATGTTATTCGTTTTTGGTTTATTTATATTTTATAAGGATAGTTTAGTCCTATACTTGAA 1871 0.3699 MWQRSHKSSEERKLELRLGPPGEESLTENIKKSSRDRNDSPLGLGGAILPSAWPSTSTSTSKAKASSFLLLQNMIVTGKDVSQFSCVENKAFSPSCANTSLSKRTVSGPVVGWPPIRSFRKNIASGSSSKLPSGSQQHEHIVSDNVASKKPTDNCGKGLFVKINMDGVPIGRKVDINAYDSYEKLSSAIDELFRGLLAEMKSSHSHTVSSYCCSGQRDSCAGGIQNKEEEEKANTGLLVGSGEYTLVYEDNEGDKMLVGDVPWHMFVSTVKRLRVLKSSDLPAFTRELETLN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00824 292 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 280 IPR003311 GO:0005634|GO:0006355
Pste6g00824 292 ProSiteProfiles PB1 domain profile. 158 278 IPR000270 GO:0005515
Pste6g00824 292 Pfam AUX/IAA family 14 281 IPR033389 -
Pste6g00824 292 SUPERFAMILY CAD & PB1 domains 151 275 - -
Pste6g00824 292 FunFam Auxin-responsive protein 153 288 - -
Pste6g00824 292 Gene3D - 153 289 - -
Pste6g00824 292 MobiDBLite consensus disorder prediction 1 19 - -
Pste6g00824 292 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00824 Pste-Chr6 3186809 3190292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00824 162 289 B3 DNA Binding Superfamily AT3G61830 25.000 6.00e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pste6g00824 AUX_IAA 7.3e-66 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g00824 6 3186809 3190292 Pste3g03602 3 28302815 28306618 ECH
Pste6g00824 6 3186809 3190292 Pste6g00824 6 3186809 3190292 ECH
Pste3g03602 3 28302815 28306618 Pste6g00824 6 3186809 3190292 PCT