LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g00820	ACAACAATGCTTTTAGCCATTACAATTACACAACAATTAACAAAATACAAATGCTTTCTTTTCATTCCTCTCTTCAACTTCAGACCCCCTTAAGTAATAACTATCACACTATTACTCTTCCTTACTTGCCACCATCACCTTTTCCTTTCCTCCAATAATCTCTCTCAACTTCATCAATTTGTTTAAGAAAAAAAGGAAAGAACCAAAAACAAGGTCTTCCAGGCTGGAGCATCCAAATCCCGTCACTTTCCTTTCTAGTTTCTGCTCAATCTGGATTTTCCTTTCCTTTTCCTCAACTGAATTTGTACTTTGCTGTACTATTCTCCTTCAAACTTAAGATCAAGTTGCTTCCTTTCTCTGGATCAAGCTCGCTCTTTTGGTTCATTTTCATTGACCCTTTTGCTCAAAATCCTCGCCACTTAAATATCACCAACCAATGATGGTTCTGGTGCGAAAACCCCACTGGGGGTTGCTTCTTCACTTTCTGCTCCACCTTCACTGCAGCACCTGTTACCCCACAGAGCCAATGAACTGTACGGATACAAACCGTGTTTGCACTTCTTTCATGGCCTTTAAGCCTGGACCGAACCACTCCCTTGCTCTGATTCAAAGCATGTTTGATGTGTTGCCTGGTGACATCACAGTTGAAGGCAACGGGTGGGGTTACATGTTCATAAGGAAGAACTGTTCTTGTGCTGCTGGTATAAAAAAGTATGTGTCCAACACCACTTTCACTGTGAAATCCAATGAGGGGTTGGTGTATGACATGGTGACGGAAGCCTATGATGGCCTTGCTTTCCTTCCCAACACAGCCAGGAGAGCCAGGAATGGTGCTGTTGTGTCACTTAGATTGTTCTGTGGCTGCTCCAGTGGACCGTGGAACTATCTGGTCAGTTATGTGATGAGAGATGGGGATAGTGTTCAGTCCTTGGCAAGCAGGTTTGGGGTTAGTATGGGTAGCATTGAGAGTGTGAATGGCATTGGTAATCCCGATAATGTCTCTGTTGGTTCGCTCTATTATGTACCCCTCGATTCTGTTCCTGGTGATCCTTATCCTCTGAATAATGCTGCTCCTCCAGTTCCTGTTCCTGCTCCCTCCTTTGATAATTTTTCAGCTGATCAAGTCAATCATAAGGCTCATGTACCCTATGGATGGATCGTTGGGGGTTTAGGTGTTGGGCTTGTTCTAATAATATTAACTGTTATTCTCTGTGTTTGTCTGAGATCATCAAAATGTTTTGCTGATACCGGAACTCATGAGAAAGATGCTGAGGGCAAGATCTCTCATAAATTCCATATTCTTCGGAACCCAAGTTTTTTTTGTGGTTCTGGAAGGTACATATGTGGCAAACATGTTAGCCAGAAGCAAACAGATAGTGAATCCAGCAATCACACAATTACCATTCCCAAAGCTTCAACTCTTGGGCCTGATGTATTTGACATGGATAAGCCTGTTGTTTTTACATATGAAGAGATTTTCTCCACAACTGATGGTTTCTCTGATTCAAATTTACTTGGTCATGGAACATACGGTTCTGTTTATTATAGCCTCCTTCGTGATCAGGAAGTTGCTATTAAAAGAATGACAGCTACTAAGACAAAAGAATTTATGTCAGAGATGAAAGTTTTGTGTAAGGTTCATCATGCTAATCTGGTAGAATTGATTGGCTATGCAGCTAGTCATGAGGAGCTTTTCCTAGTTTATGAATATGCTCAAAAGGGTTCACTTAGAAGCCATTTGCATGATCCTCAAAATAAGGGTCATTCCCCACTTTCTTGGATCATGAGGGTCCAGATTGCTCTTGATGCTGCCAGGGGCATTGAATACATACATGAGCACACAAAGACTCATTATATTTCAGATTTTGGGTTAGCAAAACTTGTTGGGAAAACAAATGAGGGAGAAGTTTCAACTACCAAAGTTGTTGGTACATATGGGTATCTTGCCCCAGAATATTTGAGTGATGGTCTTGCAACTACTAAAAGTGATGTCTATGCATTTGGTGTTGTCCTTTTTGAGATTATATCAGGAAAGGAGGCCATCATTCGATCTGAAGGCATGACGACAAAAAATCCTGAAAGACGTTCACTGGCATCCATAATGCTGGGAGTTCTTAGGAATTCACCTGATTCCATGAGCATGTCAAGCTTGAGAGATTATATTGATCCAAATATGATGGATCTGTACCCCCATGATTGTGTATTTAAGTTGGCCATGCTGGCAAAGCAATGTGTGGATGATGACCCCATCTTACGACCTGACATGAGACAAGTTGTGATATCCCTGTCACAGATTCTCCTCTCTTCTGTTGAGTGGGAAGCAACTCTAGCTGGGAATAGCCAGGTTTTCAGTGGCCTTGTTCAGGGAAGATAGTTACACAGCAGGATTTTTTTTTCTGCATCCTGTTCTATACCTTTTTTTTATGGGTTGATAGTGATGGATCCGTATGAATTGGGACATGGTGGGTCAATATATATTTTTGGCCATTTATTTTCATGAATCTCTTGTGAACTATACATTTTGTTAAGCTGCTTTCCAGTATGTAGAAAATTTTGGATGTAATTTAAGGAAGGATTTCATTGCTCTGATTTGTATTGGTATAAGTTGTAATTCGACACCAATCTATGTATGCTTATATTCTTTGATTCCTT	2652	0.408	MMVLVRKPHWGLLLHFLLHLHCSTCYPTEPMNCTDTNRVCTSFMAFKPGPNHSLALIQSMFDVLPGDITVEGNGWGYMFIRKNCSCAAGIKKYVSNTTFTVKSNEGLVYDMVTEAYDGLAFLPNTARRARNGAVVSLRLFCGCSSGPWNYLVSYVMRDGDSVQSLASRFGVSMGSIESVNGIGNPDNVSVGSLYYVPLDSVPGDPYPLNNAAPPVPVPAPSFDNFSADQVNHKAHVPYGWIVGGLGVGLVLIILTVILCVCLRSSKCFADTGTHEKDAEGKISHKFHILRNPSFFCGSGRYICGKHVSQKQTDSESSNHTITIPKASTLGPDVFDMDKPVVFTYEEIFSTTDGFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFMSEMKVLCKVHHANLVELIGYAASHEELFLVYEYAQKGSLRSHLHDPQNKGHSPLSWIMRVQIALDAARGIEYIHEHTKTHYISDFGLAKLVGKTNEGEVSTTKVVGTYGYLAPEYLSDGLATTKSDVYAFGVVLFEIISGKEAIIRSEGMTTKNPERRSLASIMLGVLRNSPDSMSMSSLRDYIDPNMMDLYPHDCVFKLAMLAKQCVDDDPILRPDMRQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR	645

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g00820	645	FunFam	PTI1-like tyrosine-protein kinase 3	473	631	-	-
	Pste6g00820	645	ProSitePatterns	Protein kinases ATP-binding region signature.	360	381	IPR017441	GO:0005524
	Pste6g00820	645	FunFam	Kinase family protein	329	425	-	-
	Pste6g00820	645	ProSiteProfiles	LysM domain profile.	152	196	IPR018392	-
	Pste6g00820	645	ProSiteProfiles	Protein kinase domain profile.	354	622	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste6g00820	645	SUPERFAMILY	Protein kinase-like (PK-like)	333	617	IPR011009	-
	Pste6g00820	645	Pfam	Protein kinase domain	355	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste6g00820	645	Gene3D	Phosphorylase Kinase; domain 1	330	425	-	-
	Pste6g00820	645	Gene3D	LysM domain	148	202	IPR036779	-
	Pste6g00820	645	Gene3D	Transferase(Phosphotransferase) domain 1	427	632	-	-
	Pste6g00820	645	Pfam	LysM domain	154	191	IPR018392	-
	Pste6g00820	645	SUPERFAMILY	LysM domain	152	197	IPR036779	-
	Pste6g00820	645	SMART	LysM_2	153	197	IPR018392	-
	Pste6g00820	645	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	79	639	IPR044812	GO:0019199\|GO:0045087

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g00820	Pste-Chr6	3147795	3156651	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g00820	29	645	Receptor kinase-like Gene Family	AT1G51940	66.615	0.0	822

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Pste6g00820		Pkinase	5.2e-31	CL0016