Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00777 ATGGGAACAGTGAGCAAAACAAAAAAGCTTGAAACGCAGCAATCCAATCGTAGGGGTAGAAGTGGAAAAAGGTATTGTGAAGAGTTGGGTGAGGGGAAGGGAAGAATGTCCTGCAAGGATGGTAGCAAAAACGGAATGGATAACGGGAAGTACGTCCGTTACACACCTGAGCAGGTTGAAGCCTTGGAGAGGCTGTATCACGATTGCCCGAAACCGAGTTCCATTCGCCGCCAACAGCTCATTCGCGACTGCCCCATTCTCTCCAACATCGAGCCCAAGCAAATCAAGGTTTGGTTCCAAAACAGAAGATGTAGAGAGAAGCAGAGAAAGGAGTCCTCCTGCCTCCAAGCTGTTAACAGGAAGTTGACTGCCATGAACAAGCTTCTCATGGAAGAGAATGATAGGTTGCAGAAACAGGTCTCTCAACTCGTCTATGAAAATGGCTATTTCCGTCACCACACCCAAAATGCAACCAAAGATACAAGCTGTCAGTCAGCTGTGACGAGTGGTCAACACAACTTGACTGCTCAGCATCCCCCACGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAAACTTTAGCAGAATTTCTTTCTAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGCGTGGCAGCAAGAGCCTGCGGTCTGGTGGGACTAGAGCCCACTAGGGTTGCAGAAATCCTCAAAGATCGGCCTTTATGGTTTCGTGATTGCCGAGCTGTTGATGTTCTCAATGTGCTGCCCACAGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCACCAACCACATTAGCTCCTGCTCGAGACTTCTGGTTGTTGCGCTACACTTCTGTTTTAGAAGATGGCAGCCTAGTGATTTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATGCCTCCTGTGCAGCATTTTGTTAGAGCAGAGATGCTGCCTAGTGGTTACCTGATCAGACCTTGTGAAGGAGGCGGTTCCATCATCCACATTGTTGATCATATGGATTTAGAGCCATGGAGTGTACCAGAAGTGCTGCGTCCACTGTACGAATCATCAACAGTGTTGGCTCAGAAGACAACTATGTCGTCCAACGTCACTGGGTGGGGTAGACGACCAGCGGCACTACGAGCTCTTAGCCAAAGATTGAGCAGGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACCATTGGTAATGATGGTGTAGATGATGTTACTATTATAGTGAATTCATCCCCTGACAAGTTAATGGGTCTGAATCTTTCCTTTGCCAATGGATTTCCATCCGTCAGTAATGCAGTGCTATGTGCCAAAGCATCAATGCTATTACAGAATGTGCCCCCAGCCATTCTTCTAAGATTCCTGCGGGAGCACAGATCAGAATGGGCAGACAACAATATGGATGCTTACACAGCTGCTGCTATTAAAGTTGGCCCTTGCAGCTTATCAGGATCTCGTGTTGGAAATTATGGAGGTCAAGTTATACTTCCTTTAGCACACACAATTGAGCAAGAGGAGTTTTTGGAAGTCATTAAATTGGAAGGAGTTGCTCATTCACCTGAAGACACAATAATGCCCAGAGAAATGTTTCTTTTGCAACTCTGTAGTGGAATGGATGAGAATGCTGTTGGCACATGTGCTGAACTTATATCTGCTCCAATTGATGCTTCCTTTGCTGATGATGCCCCCCTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGGAAGCTTCCAGCCCCAATCGCACACTTGACCTTGCATCTGCCCTTGATGTTGGCCCCAGTGGAAACCGAGCTGCTAATGATTGTGCTGGAAATTCCAGCTGTATGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGCCATATGCAAGAGCATGTAGCATCTATGGCCCGTCAATATGTTCGGAGCATTATATCATCAGTGCAACGGGTAGCATTGGCACTTTCCCCTTCTCATTTGAGTTCACATGCTGGGCTTAGAACACCGTTGGGTACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTACAGGTGCTACTTGGGTGTGGATTTACTTAAATCTAATAATGAGGGGAATGAATCTTTGCTGAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTAAAGGCATTGCCAGTGTTCACTTTCTCAAACCAGGCTGGGCTTGACATGCTGGAGACCACCCTGGTTGCATTACAGGATATAACTTTAGAGAAAATATTTGATGATCATGGCCGAAAAGTTCTCTTTTCAGAGTTTCCCCAGATTATTCAACAGGGGTTTACATGTCTCCAAGGTGGTATTTGTCTTTCAAGCATGGGGCGACCTGTGTCGTACGAGAGAGTTGTTGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATTTGTTTTATGTTTATGAACTGGTCTTTTGTTTGACATTTTGTTCCTGAGCAGACTTGTACTTAATGTAAGTGTTGTATCTAAAAGATTAACTCGAAGACACTTGAGCTTTGTTTGGTTGGTCTTCTGCTGTACTTGGAACGCATATTTTGTATAACTACTCATGTTAGTCTATGTAACCTGTTTCTTATTCTACTACCAGC 2732 0.4535 MGTVSKTKKLETQQSNRRGRSGKRYCEELGEGKGRMSCKDGSKNGMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRDCPILSNIEPKQIKVWFQNRRCREKQRKESSCLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRHHTQNATKDTSCQSAVTSGQHNLTAQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMSSNVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTTIGNDGVDDVTIIVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTAAAIKVGPCSLSGSRVGNYGGQVILPLAHTIEQEEFLEVIKLEGVAHSPEDTIMPREMFLLQLCSGMDENAVGTCAELISAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDVGPSGNRAANDCAGNSSCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRTPLGTPEAQTLAHWICNSYRCYLGVDLLKSNNEGNESLLKSLWHHSDAILCCTLKALPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGRKVLFSEFPQIIQQGFTCLQGGICLSSMGRPVSYERVVAWKVLNEEENAHCICFMFMNWSFV 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00777 854 Gene3D - 41 114 - -
Pste6g00777 854 MobiDBLite consensus disorder prediction 166 185 - -
Pste6g00777 854 SUPERFAMILY Bet v1-like 190 384 - -
Pste6g00777 854 Coils Coil 115 146 - -
Pste6g00777 854 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 46 854 IPR044830 GO:0003700
Pste6g00777 854 Gene3D - 225 394 IPR023393 -
Pste6g00777 854 FunFam Homeobox-leucine zipper protein REVOLUTA 50 105 - -
Pste6g00777 854 Pfam START domain 191 391 IPR002913 GO:0008289
Pste6g00777 854 CDD homeodomain 50 110 IPR001356 GO:0003677
Pste6g00777 854 Pfam Homeodomain 50 108 IPR001356 GO:0003677
Pste6g00777 854 CDD bZIP 102 141 - -
Pste6g00777 854 Pfam MEKHLA domain 711 853 IPR013978 -
Pste6g00777 854 SMART HOX_1 47 113 IPR001356 GO:0003677
Pste6g00777 854 MobiDBLite consensus disorder prediction 11 25 - -
Pste6g00777 854 ProSiteProfiles 'Homeobox' domain profile. 45 109 IPR001356 GO:0003677
Pste6g00777 854 CDD START_ArGLABRA2_like 185 391 - -
Pste6g00777 854 SMART START_1 190 401 IPR002913 GO:0008289
Pste6g00777 854 ProSiteProfiles START domain profile. 181 382 IPR002913 GO:0008289
Pste6g00777 854 SUPERFAMILY Homeodomain-like 49 111 IPR009057 -
Pste6g00777 854 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00777 Pste-Chr6 2976674 2985039 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00777 36 806 Homeobox Transcription Factor Family AT1G52150 83.544 0.0 1368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste6g00777 START 2.5e-52 CL0209